(Q35155636)

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Transcriptome assembly and microarray construction for Enchytraeus crypticus, a model oligochaete to assess stress response mechanisms derived from soil conditions

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scholarly article

1 reference

Europe PubMed Central

6 August 2017

Transcriptome assembly and microarray construction for Enchytraeus crypticus, a model oligochaete to assess stress response mechanisms derived from soil conditions (English)

1 reference

Europe PubMed Central

6 August 2017

Enchytraeus crypticus

object named as

Enchytraeus crypticus

1 reference

based on heuristic

inferred from title

John K. Colbourne

3

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24758194%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

Cornelis A.M. van Gestel

5

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31 May 2020

7

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31 May 2020

8

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31 May 2020

9

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31 May 2020

author name string

Marta P Castro-Ferreira

1

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31 May 2020

Tjalf E de Boer

2

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31 May 2020

Riet Vooijs

4

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31 May 2020

Nico M van Straalen

6

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31 May 2020

language of work or name

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publication date

23 April 2014

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Europe PubMed Central

6 August 2017

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24758194%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

15

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31 May 2020

302

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31 May 2020

describes a project that uses

1 reference

Europe PubMed Central

22 June 2022

https://europepmc.org/article/PMC/4234436

based on heuristic

inferred from PubMed Central ID database lookup

https://scigraph.springernature.com/pub.10.1186/1471-2164-15-302

0 references

An approach for integrating toxicogenomic data in risk assessment: the dibutyl phthalate case study

1 reference

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13 July 2018

Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma americanum

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13 July 2018

Insights into bilaterian evolution from three spiralian genomes

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13 July 2018

Transcriptional responses in Enchytraeus albidus (Oligochaeta): comparison between cadmium and zinc exposure and linkage to reproduction effects.

1 reference

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13 July 2018

Gene expression responses linked to reproduction effect concentrations (EC 10,20,50,90) of dimethoate, atrazine and carbendazim, in Enchytraeus albidus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4234436

13 July 2018

Enchytraeus albidus microarray: enrichment, design, annotation and database (EnchyBASE).

1 reference

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13 July 2018

Reference-free transcriptome assembly in non-model animals from next-generation sequencing data.

1 reference

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13 July 2018

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13 July 2018

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

1 reference

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13 July 2018

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

1 reference

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13 July 2018

The gene complement of the ancestral bilaterian - was Urbilateria a monster?

1 reference

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13 July 2018

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

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13 July 2018

Genomics technology for assessing soil pollution

1 reference

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13 July 2018

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.

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13 July 2018

Collembase: a repository for springtail genomics and soil quality assessment

1 reference

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13 July 2018

Ecotoxicological risk assessment using DNA chips and cellular reporters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4234436

13 July 2018

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4234436

13 July 2018

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4234436

13 July 2018

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

1 reference

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13 July 2018

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

1 reference

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13 July 2018

The L1Tc C-terminal domain from Trypanosoma cruzi non-long terminal repeat retrotransposon codes for a protein that bears two C2H2 zinc finger motifs and is endowed with nucleic acid chaperone activity.

1 reference

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13 July 2018

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

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13 July 2018

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13 July 2018

OrfPredictor: predicting protein-coding regions in EST-derived sequences

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13 July 2018

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

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13 July 2018

Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster

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13 July 2018

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

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13 July 2018

InterProScan--an integration platform for the signature-recognition methods in InterPro

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13 July 2018

Enchytraeids as indicator organisms for chemical stress in terrestrial ecosystems.

1 reference

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13 July 2018

Functional activity and role of cation-efflux family members in Ni hyperaccumulation in Thlaspi goesingense

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13 July 2018

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13 July 2018

ZnT-2, a mammalian protein that confers resistance to zinc by facilitating vesicular sequestration

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13 July 2018

Functional environmental genomics of a municipal landfill soil.

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27 September 2018

Enchytraeus crypticus as model species in soil ecotoxicology.

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27 September 2018

Effect of Cu-nanoparticles versus Cu-salt in Enchytraeus albidus (Oligochaeta): differential gene expression through microarray analysis.

1 reference

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27 September 2018

Gene expression analysis reveals a gene set discriminatory to different metals in soil.

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27 September 2018

Non-linear normalization and background correction in one-channel cDNA microarray studies

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27 September 2018

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27 September 2018

Exposure of Enchytraeus albidus to Cd and Zn – Changes in cellular energy allocation (CEA) and linkage to transcriptional, enzymatic and reproductive effects

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12 December 2020

based on heuristic

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The galvanization of biology: a growing appreciation for the roles of zinc

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-15-302

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24758194%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

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31 May 2020

1 reference

Europe PubMed Central

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31 May 2020

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