(Q35165240)

6 August 2017

1 reference

title

A structural perspective on genome evolution (English)

1 reference

6 August 2017

4

Christine Orengo

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author name string

David Lee

series ordinal

1

1 reference

PubMed ID

12831888

6 August 2017

Alastair Grant

series ordinal

2

1 reference

PubMed ID

12831888

6 August 2017

Daniel Buchan

series ordinal

3

1 reference

6 August 2017

1 June 2003

1 reference

Current Opinion in Structural Biology

6 August 2017

1 reference

6 August 2017

13

1 reference

6 August 2017

359-369

1 reference

6 August 2017

3

1 reference

The Protein Data Bank and structural genomics

6 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

A unifold, mesofold, and superfold model of protein fold use

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

The structure of the protein universe and genome evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

The CATH database: an extended protein family resource for structural and functional genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

1 reference

7 January 2021

Protein structure prediction and structural genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Did evolution leap to create the protein universe?

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Comparing function and structure between entire proteomes

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Review: what can structural classifications reveal about protein evolution?

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Fold change in evolution of protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Understanding hierarchical protein evolution from first principles 1 1Edited by J. Thornton

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

SCOP database in 2002: refinements accommodate structural genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

CDD: a curated Entrez database of conserved domain alignments

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Quantifying the similarities within fold space.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Fold predictions for bacterial genomes.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

The SYSTERS protein sequence cluster set.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

ProtoMap: automatic classification of protein sequences and hierarchy of protein families

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Target space for structural genomics revisited.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Completeness in structural genomics.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Evolution of function in protein superfamilies, from a structural perspective.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Practical limits of function prediction

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Sequence and structural differences between enzyme and nonenzyme homologs.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Domain combinations in archaeal, eubacterial and eukaryotic proteomes

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Determination of protein function, evolution and interactions by structural genomics.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Improving the performance of DomainParser for structural domain partition using neural network

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Gene3D: structural assignment for whole genes and genomes using the CATH domain structure database

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

A unified statistical framework for sequence comparison and structure comparison

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Identification of homology in protein structure classification.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

A comparison of profile hidden Markov model procedures for remote homology detection

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Assigning genomic sequences to CATH

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Identification of related proteins on family, superfamily and fold level.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

What is the value added by human intervention in protein structure prediction?

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Hidden Markov models that use predicted secondary structures for fold recognition

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Combination of threading potentials and sequence profiles improves fold recognition.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Comparison of sequence profiles. Strategies for structural predictions using sequence information

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Assessment of the CASP4 fold recognition category

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Protein structure modeling for structural genomics.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Comparative protein structure modeling of genes and genomes

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Protein modelling for all

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

The European Bioinformatics Institute's data resources.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

The InterPro database, 2003 brings increased coverage and new features

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Biological information: making it accessible and integrated (and trying to make sense of it).

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

The frequency distribution of gene family sizes in complete genomes.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Protein family and fold occurrence in genomes: power-law behaviour and evolutionary model

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Estimating the number of protein folds and families from complete genome data

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

The dominance of the population by a selected few: power-law behaviour applies to a wide variety of genomic properties

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Functional fingerprints of folds: evidence for correlated structure-function evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Enzyme function less conserved than anticipated.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Emergence of diverse biochemical activities in evolutionarily conserved structural scaffolds of proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Plasticity of enzyme active sites

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

The geometry of domain combination in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Homology, pathway distance and chromosomal localization of the small molecule metabolism enzymes in Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Small-molecule metabolism: an enzyme mosaic

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Functional versatility and molecular diversity of the metabolic map of Escherichia coli.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Evolution of enzymes in metabolism: a network perspective.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Comparison of the small molecule metabolic enzymes of Escherichia coli and Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Evolution of transcription factors and the gene regulatory network in Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

An efficient algorithm for large-scale detection of protein families

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

Exhaustive enumeration of protein domain families.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900079-4

7 January 2021

10.1016/S0959-440X(03)00079-4

Identifiers

DOI

1 reference

6 August 2017

1 reference

PubMed ID

12831888