(Q35175852)

6 August 2017

title

Angiogenic activity of breast cancer patients' monocytes reverted by combined use of systems modeling and experimental approaches (English)

1 reference

6 August 2017

Isaac Crespo

2

0 references

George Coukos

object named as

George Coukos

18

0 references

Robin Liechti

7

object named as

Robin Liechti

1 reference

6 August 2017

20

Ioannis Xenarios

1 reference

6 August 2017

Nicolas Guex

1

1 reference

6 August 2017

Sylvian Bron

3

1 reference

6 August 2017

Assia Ifticene-Treboux

4

1 reference

6 August 2017

Eveline Faes-Van't Hull

5

1 reference

6 August 2017

Solange Kharoubi

6

1 reference

6 August 2017

Patricia Werffeli

8

1 reference

6 August 2017

Mark Ibberson

9

1 reference

6 August 2017

Francois Majo

10

1 reference

6 August 2017

Michäel Nicolas

11

1 reference

6 August 2017

Julien Laurent

12

1 reference

6 August 2017

Abhishek Garg

13

1 reference

6 August 2017

Khalil Zaman

14

1 reference

6 August 2017

Hans-Anton Lehr

15

1 reference

6 August 2017

Brian J Stevenson

16

1 reference

6 August 2017

Curzio Rüegg

17

1 reference

6 August 2017

Jean-François Delaloye

19

1 reference

6 August 2017

Marie-Agnès Doucey

21

1 reference

6 August 2017

language of work or name

1 reference

13 March 2015

1 reference

PLOS Computational Biology

6 August 2017

published in

1 reference

6 August 2017

volume

11

1 reference

6 August 2017

issue

3

1 reference

6 August 2017

page(s)

e1004050

1 reference

Creative Commons Attribution 4.0 International

6 August 2017

copyright license

start time

13 March 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

limma

object named as

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/4359163

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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13 July 2018

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Comparing signaling networks between normal and transformed hepatocytes using discrete logical models

13 July 2018

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Constructing biological pathways by a two-step counting approach

13 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Proangiogenic factor PlGF programs CD11b(+) myelomonocytes in breast cancer during differentiation of their hematopoietic progenitors.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Elementary signaling modes predict the essentiality of signal transduction network components

13 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Training signaling pathway maps to biochemical data with constrained fuzzy logic: quantitative analysis of liver cell responses to inflammatory stimuli

13 July 2018

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Tumor-associated macrophages in the cutaneous SCC microenvironment are heterogeneously activated

13 July 2018

1 reference

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Modeling of cellular processes: methods, data, and requirements

13 July 2018

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A Boolean model of the gene regulatory network underlying Mammalian cortical area development

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Fc block treatment, dead cells exclusion, and cell aggregates discrimination concur to prevent phenotypical artifacts in the analysis of subpopulations of tumor-infiltrating CD11b(+) myelomonocytic cells.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Signaling by members of the TGF-beta family in vascular morphogenesis and disease

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Boolean models of within-host immune interactions

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Tumor angiogenesis: insights and innovations

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Elusive identities and overlapping phenotypes of proangiogenic myeloid cells in tumors

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Molecular signatures of maturing dendritic cells: implications for testing the quality of dendritic cell therapies

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

An online survival analysis tool to rapidly assess the effect of 22,277 genes on breast cancer prognosis using microarray data of 1,809 patients

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Gene expression analysis of macrophages that facilitate tumor invasion supports a role for Wnt-signaling in mediating their activity in primary mammary tumors

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

ON/OFF and beyond--a boolean model of apoptosis

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Transforming Boolean models to continuous models: methodology and application to T-cell receptor signaling

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Modeling system states in liver cells: survival, apoptosis and their modifications in response to viral infection

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

The logic of EGFR/ErbB signaling: theoretical properties and analysis of high-throughput data

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

High-density gene expression analysis of tumor-associated macrophages from mouse mammary tumors

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

The paracrine role of Tie-2-expressing monocytes in tumor angiogenesis

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Modelling metabolic networks using power-laws and S-systems

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

The role of myeloid cells in the promotion of tumour angiogenesis

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Synchronous versus asynchronous modeling of gene regulatory networks

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

c-Cbl expression levels regulate the functional responses of human central and effector memory CD4 T cells

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

13 July 2018

1 reference

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A methodology for the structural and functional analysis of signaling and regulatory networks

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Macrophages promote angiogenesis in human breast tumour spheroids in vivo.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

13 July 2018

1 reference

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Bioconductor: open software development for computational biology and bioinformatics

13 July 2018

1 reference

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Role of PlGF in the intra- and intermolecular cross talk between the VEGF receptors Flt1 and Flk1

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Intussusceptive angiogenesis--the alternative to capillary sprouting

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Angiogenesis assays: a critical overview

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Vascular and haematopoietic stem cells: novel targets for anti-angiogenesis therapy?

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Angiogenesis in cancer and other diseases

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Necrosis correlates with high vascular density and focal macrophage infiltration in invasive carcinoma of the breast

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Tumor Growth and Neovascularization: An Experimental Model Using the Rabbit Cornea 2

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

TIE-2 and VEGFR kinase activities drive immunosuppressive function of TIE-2-expressing monocytes in human breast tumors.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Integration of Boolean models exemplified on hepatocyte signal transduction.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Boolean models can explain bistability in the lac operon.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Cell-cell interaction and diversity of emergent behaviours.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Comparing Boolean and piecewise affine differential models for genetic networks.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Computing combinatorial intervention strategies and failure modes in signaling networks.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Identification of proangiogenic TIE2-expressing monocytes (TEMs) in human peripheral blood and cancer.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Microvessel density, VEGF expression, and tumor-associated macrophages in breast tumors: correlations with prognostic parameters.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Tie2 identifies a hematopoietic lineage of proangiogenic monocytes required for tumor vessel formation and a mesenchymal population of pericyte progenitors.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Tensional forces in fibrillar extracellular matrices control directional capillary sprouting.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Dynamical behaviour of biological regulatory networks--I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359163

Strengths and Weaknesses of Selected Modeling Methods Used in Systems Biology

27 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004050

Association of macrophage infiltration with angiogenesis and prognosis in invasive breast carcinoma

21 January 2018

1 reference

12 December 2020

Hypoxia-induced, perinecrotic expression of endothelial Per-ARNT-Sim domain protein-1/hypoxia-inducible factor-2alpha correlates with tumor progression, vascularization, and focal macrophage infiltration in bladder cancer

1 reference

12 December 2020

Characterization of macrophage subpopulations and microvessel density in carcinomas of the gastrointestinal tract

1 reference

12 December 2020

Tumor-associated macrophage infiltration in pulmonary adenocarcinoma: association with angiogenesis and poor prognosis

1 reference

12 December 2020

Cell fates as high-dimensional attractor states of a complex gene regulatory network

1 reference

12 December 2020

10.1371/JOURNAL.PCBI.1004050

Identifiers

DOI

1 reference

journals/ploscb/GuexCBIHKLWIMNL15

6 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

6 August 2017

1 reference