(Q35185890)

English

Analyses of the interaction between the origin binding domain from simian virus 40 T antigen and single-stranded DNA provide insights into DNA unwinding and initiation of DNA replication

scientific article published on 27 September 2006

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scholarly article

1 reference

Europe PubMed Central

7 August 2017

Analyses of the interaction between the origin binding domain from simian virus 40 T antigen and single-stranded DNA provide insights into DNA unwinding and initiation of DNA replication (English)

1 reference

Europe PubMed Central

7 August 2017

object named as

simian virus 40

1 reference

based on heuristic

inferred from title

author name string

Danielle K Reese

1

1 reference

Europe PubMed Central

7 August 2017

Gretchen Meinke

2

1 reference

Europe PubMed Central

7 August 2017

Anuradha Kumar

3

1 reference

Europe PubMed Central

7 August 2017

Stephanie Moine

4

1 reference

Europe PubMed Central

7 August 2017

Kathleen Chen

5

1 reference

Europe PubMed Central

7 August 2017

James L Sudmeier

6

1 reference

Europe PubMed Central

7 August 2017

William Bachovchin

7

1 reference

Europe PubMed Central

7 August 2017

Andrew Bohm

8

1 reference

Europe PubMed Central

7 August 2017

Peter A Bullock

9

1 reference

Europe PubMed Central

7 August 2017

language of work or name

0 references

publication date

27 September 2006

1 reference

Europe PubMed Central

7 August 2017

number of pages

12

1 reference

based on heuristic

inferred from page(s)

Journal of Virology

1 reference

Europe PubMed Central

7 August 2017

80

1 reference

Europe PubMed Central

7 August 2017

12248-12259

1 reference

Europe PubMed Central

7 August 2017

24

1 reference

Europe PubMed Central

7 August 2017

Mechanism of DNA translocation in a replicative hexameric helicase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

Crystal structure of the simian virus 40 large T-antigen origin-binding domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

The roles of the residues on the channel beta-hairpin and loop structures of simian virus 40 hexameric helicase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

CELLULAR DNA REPLICASES: Components and Dynamics at the Replication Fork

1 reference

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13 July 2018

Insights into hRPA32 C-terminal domain--mediated assembly of the simian virus 40 replisome

1 reference

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Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks

1 reference

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The X-ray structure of the papillomavirus helicase in complex with its molecular matchmaker E2.

1 reference

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13 July 2018

Interactions required for binding of simian virus 40 T antigen to the viral origin and molecular modeling of initial assembly events

1 reference

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13 July 2018

Large T antigen on the simian virus 40 origin of replication: a 3D snapshot prior to DNA replication

1 reference

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Initiation of DNA replication: lessons from viral initiator proteins

1 reference

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13 July 2018

Mcm4,6,7 uses a "pump in ring" mechanism to unwind DNA by steric exclusion and actively translocate along a duplex.

1 reference

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13 July 2018

Loading Rho to terminate transcription

1 reference

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Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading

1 reference

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Structure of the replicative helicase of the oncoprotein SV40 large tumour antigen

1 reference

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13 July 2018

Characterization of the DNA-binding properties of the origin-binding domain of simian virus 40 large T antigen by fluorescence anisotropy

1 reference

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Characterization of simian virus 40 T-antigen double hexamers bound to a replication fork. The active form of the helicase

1 reference

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Structural unity among viral origin binding proteins: crystal structure of the nuclease domain of adeno-associated virus Rep

1 reference

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The structure of a replication initiator unites diverse aspects of nucleic acid metabolism

1 reference

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NMRKIN: simulating line shapes from two-dimensional spectra of proteins upon ligand binding

1 reference

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13 July 2018

SV40 large T antigen hexamer structure: domain organization and DNA-induced conformational changes

1 reference

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DNA helicases, genomic instability, and human genetic disease

1 reference

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13 July 2018

In the simian virus 40 in vitro replication system, start site selection by the polymerase alpha-primase complex is not significantly altered by changes in the concentration of ribonucleotides

1 reference

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13 July 2018

Structural basis for the inactivation of retinoblastoma tumor suppressor by SV40 large T antigen

1 reference

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13 July 2018

Role of single-stranded DNA binding activity of T antigen in simian virus 40 DNA replication

1 reference

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13 July 2018

SV40 large T antigen functions in DNA replication and transformation

1 reference

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13 July 2018

The hexameric eukaryotic MCM helicase: building symmetry from nonidentical parts.

1 reference

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13 July 2018

Structure and function of hexameric helicases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

Large T-antigen double hexamers imaged at the simian virus 40 origin of replication

1 reference

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13 July 2018

Multiple competition reactions for RPA order the assembly of the DNA polymerase delta holoenzyme.

1 reference

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13 July 2018

Sequence requirements for the assembly of simian virus 40 T antigen and the T-antigen origin binding domain on the viral core origin of replication

1 reference

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13 July 2018

The organization of replication and transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

Two regions of simian virus 40 T antigen determine cooperativity of double-hexamer assembly on the viral origin of DNA replication and promote hexamer interactions during bidirectional origin DNA unwinding.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

The replication protein A binding site in simian virus 40 (SV40) T antigen and its role in the initial steps of SV40 DNA replication.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

The DNA replication fork in eukaryotic cells.

1 reference

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13 July 2018

Assembly of T-antigen double hexamers on the simian virus 40 core origin requires only a subset of the available binding sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

The initiation of simian virus 40 DNA replication in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

SV40 large tumor antigen (T antigen): database of mutants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

A hexameric helicase encircles one DNA strand and excludes the other during DNA unwinding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution

1 reference

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13 July 2018

Dimerization of simian virus 40 T-antigen hexamers activates T-antigen DNA helicase activity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

Replication protein A: a heterotrimeric, single-stranded DNA-binding protein required for eukaryotic DNA metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

Role of protein-protein interactions in the function of replication protein A (RPA): RPA modulates the activity of DNA polymerase alpha by multiple mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

Six molecules of SV40 large T antigen assemble in a propeller-shaped particle around a channel.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

Purification of the simian virus 40 (SV40) T antigen DNA-binding domain and characterization of its interactions with the SV40 origin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

Werner syndrome: entering the helicase era.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

Solution structure of the origin DNA-binding domain of SV40 T-antigen

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

Biochemical analysis of mutants with changes in the origin-binding domain of simian virus 40 tumor antigen

1 reference

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13 July 2018

A common set of conserved motifs in a vast variety of putative nucleic acid-dependent ATPases including MCM proteins involved in the initiation of eukaryotic DNA replication

1 reference

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13 July 2018

The DNA-binding domain of simian virus 40 tumor antigen has multiple functions

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

Mapping initiation sites for simian virus 40 DNA synthesis events in vitro

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13 July 2018

DNA-Binding Properties of Simian Virus 40 T-Antigen Mutants Defective in Viral DNA Replication

1 reference

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13 July 2018

Mutant of simian virus 40 large T-antigen that is defective for viral DNA synthesis, but competent for transformation of cultured rat cells

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13 July 2018

Simian virus 40 (SV40) T antigen binds specifically to double-stranded DNA but not to single-stranded DNA or DNA/RNA hybrids containing the SV40 regulatory sequences

1 reference

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13 July 2018

p53 and DNA polymerase alpha compete for binding to SV40 T antigen

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

Simian virus 40-transformed human cells that express large T antigens defective for viral DNA replication

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

Initiation of simian virus 40 DNA replication in vitro: large-tumor-antigen- and origin-dependent unwinding of the template

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

13 July 2018

Simian virus 40 (SV40) DNA replication: SV40 large T antigen unwinds DNA containing the SV40 origin of replication.

1 reference

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13 July 2018

A second domain of simian virus 40 T antigen in which mutations can alter the cellular localization of the antigen

1 reference

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13 July 2018

DNA helicase activity of SV40 large tumor antigen

1 reference

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13 July 2018

Replication and transformation functions of in vitro-generated simian virus 40 large T antigen mutants

1 reference

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13 July 2018

Simian virus 40 origin DNA-binding domain on large T antigen.

1 reference

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13 July 2018

T antigen and template requirements for SV40 DNA replication in vitro

1 reference

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13 July 2018

Site-directed mutagenesis of the simian virus 40 large T-antigen gene: replication-defective amino acid substitution mutants that retain the ability to induce morphological transformation

1 reference

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13 July 2018

Characterization of a new simian virus 40 mutant, tsA3900, isolated from deletion mutant tsA1499.

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13 July 2018

Genetic and biochemical analysis of transformation-competent, replication-defective simian virus 40 large T antigen mutants

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13 July 2018

The unwinding of duplex regions in DNA by the simian virus 40 large tumor antigen-associated DNA helicase activity

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13 July 2018

Unwinding of duplex DNA from the SV40 origin of replication by T antigen

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13 July 2018

Large T-antigen mutants define multiple steps in the initiation of simian virus 40 DNA replication

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13 July 2018

Helicase, DNA-binding, and immunological properties of replication-defective simian virus 40 mutant T antigens.

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13 July 2018

Two DNA polymerases may be required for synthesis of the lagging DNA strand of simian virus 40.

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13 July 2018

Identification of simian virus 40 T-antigen residues important for specific and nonspecific binding to DNA and for helicase activity

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13 July 2018

Mapping of helicase and helicase substrate-binding domains on simian virus 40 large T antigen

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13 July 2018

Four major sequence elements of simian virus 40 large T antigen coordinate its specific and nonspecific DNA binding.

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13 July 2018

Binding and unwinding--how T antigen engages the SV40 origin of DNA replication

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13 July 2018

The in vitro replication of DNA containing the SV40 origin

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13 July 2018

Initiation of simian virus 40 DNA synthesis in vitro

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13 July 2018

Functional characterization of temperature-sensitive mutants of simian virus 40 large T antigen

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13 July 2018

Structure and function of simian virus 40 large tumor antigen

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13 July 2018

Interaction of DNA polymerase alpha-primase with cellular replication protein A and SV40 T antigen

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13 July 2018

Studies on the initiation of simian virus 40 replication in vitro: RNA primer synthesis and its elongation

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13 July 2018

Simian virus 40 T-antigen DNA helicase is a hexamer which forms a binary complex during bidirectional unwinding from the viral origin of DNA replication

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13 July 2018

Single strand DNA binding of simian virus 40 tumor antigen

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13 July 2018

Assembly of a double hexameric helicase

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27 September 2018

Polymorphism and double hexamer structure in the archaeal minichromosome maintenance (MCM) helicase from Methanobacterium thermoautotrophicum.

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27 September 2018

Mechanisms of conformational change for a replicative hexameric helicase of SV40 large tumor antigen

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27 September 2018

Insights into the oligomeric states, conformational changes, and helicase activities of SV40 large tumor antigen

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27 September 2018

T antigen origin-binding domain of simian virus 40: determinants of specific DNA binding

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27 September 2018

Asymmetric interactions of hexameric bacteriophage T7 DNA helicase with the 5'- and 3'-tails of the forked DNA substrate.

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27 September 2018

Twin DNA Pumps of a Hexameric Helicase Provide Power to Simultaneously Melt Two Duplexes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676264

15 November 2018

Organization of the archaeal MCM complex on DNA and implications for the helicase mechanism

1 reference

https://pubmed.ncbi.nlm.nih.gov/17005644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural basis for the cooperative assembly of large T antigen on the origin of replication

1 reference

https://pubmed.ncbi.nlm.nih.gov/17005644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SV40 Early mutants that are defective for viral DNA synthesis but competent for transformation of cultured rat and simian cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/17005644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In vitro mutagenesis of a putative DNA binding domain of SV40 large-T

1 reference

https://pubmed.ncbi.nlm.nih.gov/17005644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/JVI.01201-06

1 reference

Europe PubMed Central

7 August 2017

1 reference

Europe PubMed Central

7 August 2017

1 reference

Europe PubMed Central

7 August 2017

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