(Q35192759)

7 August 2017

title

Reconstructing the history of maize streak virus strain a dispersal to reveal diversification hot spots and its origin in southern Africa (English)

1 reference

7 August 2017

0 references

4

Philippe Lemey

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Michelo Simuyandi

Michelo Simuyandi

8

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Gordon William Harkins

Gordon W Harkins

2

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Rob W Briddon

Rob W Briddon

25

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Edward Rybicki

Edward P Rybicki

27

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author name string

Adérito L Monjane

1

1 reference

7 August 2017

Darren P Martin

3

1 reference

7 August 2017

Pierre Lefeuvre

5

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7 August 2017

Dionne N Shepherd

6

1 reference

7 August 2017

Sunday Oluwafemi

7

1 reference

7 August 2017

Innocent Zinga

9

1 reference

7 August 2017

Ephrem K Komba

10

1 reference

7 August 2017

Didier P Lakoutene

11

1 reference

7 August 2017

Noella Mandakombo

12

1 reference

7 August 2017

Joseph Mboukoulida

13

1 reference

7 August 2017

Silla Semballa

14

1 reference

7 August 2017

Appolinaire Tagne

15

1 reference

7 August 2017

Fidèle Tiendrébéogo

16

1 reference

7 August 2017

Julia B Erdmann

17

1 reference

7 August 2017

Tania van Antwerpen

18

1 reference

7 August 2017

Betty E Owor

19

1 reference

7 August 2017

Bradley Flett

20

1 reference

7 August 2017

Moses Ramusi

21

1 reference

7 August 2017

Oliver P Windram

22

1 reference

7 August 2017

Rizwan Syed

23

1 reference

7 August 2017

Jean-Michel Lett

24

1 reference

7 August 2017

Peter G Markham

26

1 reference

7 August 2017

Arvind Varsani

28

1 reference

7 August 2017

language of work or name

English

0 references

publication date

29 June 2011

1 reference

7 August 2017

number of pages

14

1 reference

based on heuristic

inferred from page(s)

published in

Journal of Virology

1 reference

7 August 2017

volume

85

1 reference

7 August 2017

issue

18

1 reference

7 August 2017

page(s)

9623-9636

1 reference

Phylodynamics and human-mediated dispersal of a zoonotic virus

7 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

RDP3: a flexible and fast computer program for analyzing recombination

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Phylogeography takes a relaxed random walk in continuous space and time

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Maize streak virus: an old and complex â emergingâ pathogen

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Replicative intermediates of maize streak virus found during leaf development

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Comparative analysis of Panicum streak virus and Maize streak virus diversity, recombination patterns and phylogeography.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Insights into the Evolutionary History of an Emerging Livestock Pathogen: Porcine Circovirus 2

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Bayesian phylogeography finds its roots

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Dating the origins of the maize-adapted strain of maize streak virus, MSV-A.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Phylogeography and molecular epidemiology of hepatitis C virus genotype 2 in Africa

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Recombination, decreased host specificity and increased mobility may have driven the emergence of maize streak virus as an agricultural pathogen.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Evolutionary and transmission dynamics of reassortant H5N1 influenza virus in Indonesia.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Avoidance of protein fold disruption in natural virus recombinants

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

BEAST: Bayesian evolutionary analysis by sampling trees

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Genetic analysis of maize streak virus isolates from Uganda reveals widespread distribution of a recombinant variant

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

An exact nonparametric method for inferring mosaic structure in sequence triplets

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Successful application of FTA Classic Card technology and use of bacteriophage phi29 DNA polymerase for large-scale field sampling and cloning of complete maize streak virus genomes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Multi-tasking of nonstructural gene products is required for bean yellow dwarf geminivirus transcriptional regulation

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

A simple and robust statistical test for detecting the presence of recombination

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Maize streak virus genes essential for systemic spread and symptom development

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Evaluation of methods for detecting recombination from DNA sequences: computer simulations

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

DNA forms indicate rolling circle and recombination-dependent replication of Abutilon mosaic virus

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Bayesian selection of continuous-time Markov chain evolutionary models

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Analysis of the diversity of African streak mastreviruses using PCR-generated RFLPs and partial sequence data.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Eight decades of maize streak virus research

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Infectivity and complete nucleotide sequence of the genome of a genetically distinct strain of maize streak virus from Reunion Island

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

The two nonstructural proteins from wheat dwarf virus involved in viral gene expression and replication are retinoblastoma-binding proteins

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

The activity of the coat protein promoter of chloris striate mosaic virus is enhanced by its own and C1-C2 gene products

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Analysis of the genetic variability of maize streak virus

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Replication of wheat dwarf virus DNA in protoplasts and analysis of coat protein mutants in protoplasts and plants

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Coordinate regulation of replication and virion sense gene expression in wheat dwarf virus

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Analyzing the mosaic structure of genes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

RNA-primed complementary-sense DNA synthesis of the geminivirus African cassava mosaic virus

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Specificity of Agrobacterium-mediated delivery of maize streak virus DNA to members of the Gramineae

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

A novel sugarcane-infecting mastrevirus from South Africa

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

A protocol for the rapid isolation of full geminivirus genomes from dried plant tissue.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Geminivirus strain demarcation and nomenclature

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Detection and frequency of recombination in tomato-infecting begomoviruses of South and Southeast Asia

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Investigation of Maize streak virus pathogenicity determinants using chimaeric genomes

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Sequence diversity and virulence in Zea mays of Maize streak virus isolates.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

The relative infectivities and genomic characterisation of three distinct mastreviruses from South Africa.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

RDP: detection of recombination amongst aligned sequences

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

A Modified Bootscan Algorithm for Automated Identification of Recombinant Sequences and Recombination Breakpoints

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3165777

Possible emergence of new geminiviruses by frequent recombination

8 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21715477

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JVI.00640-11

1 reference

7 August 2017

1 reference

7 August 2017

1 reference