(Q35202669)

7 August 2017

bacterial infection drives the expression dynamics of microRNAs and their isomiRs (English)

1 reference

7 August 2017

1 reference

10

1 reference

7 August 2017

Brigitte Gicquel

0 references

Ludovic Tailleux

Ludovic Tailleux

2

0 references

Luis B Barreiro

Luis B Barreiro

8

0 references

Katherine J Siddle

1

Katherine J Siddle

1 reference

7 August 2017

4

Yong-Hwee Eddie Loh

1 reference

7 August 2017

3

Matthieu Deschamps

1 reference

7 August 2017

Cécile Deluen

5

1 reference

PubMed ID

25793259

7 August 2017

Christophe Antoniewski

7

1 reference

PubMed ID

25793259

7 August 2017

Laurent Farinelli

9

1 reference

7 August 2017

20 March 2015

1 reference

7 August 2017

1 reference

7 August 2017

11

1 reference

7 August 2017

e1005064

1 reference

7 August 2017

3

1 reference

Creative Commons Attribution 4.0 International

7 August 2017

start time

20 March 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

DESeq2

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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13 July 2018

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13 July 2018

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13 July 2018

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Mycobacterium tuberculosis controls microRNA-99b (miR-99b) expression in infected murine dendritic cells to modulate host immunity

13 July 2018

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13 July 2018

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13 July 2018

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Fast R Functions for Robust Correlations and Hierarchical Clustering

13 July 2018

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Degradation of host microRNAs by poxvirus poly(A) polymerase reveals terminal RNA methylation as a protective antiviral mechanism

13 July 2018

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Altered microRNA signatures in sputum of patients with active pulmonary tuberculosis

13 July 2018

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IsomiRs--the overlooked repertoire in the dynamic microRNAome.

13 July 2018

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The mammalian microRNA response to bacterial infections

13 July 2018

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Pathogenesis of Y. enterocolitica and Y. pseudotuberculosis in Human Yersiniosis

13 July 2018

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Common patterns and disease-related signatures in tuberculosis and sarcoidosis

13 July 2018

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Deep annotation of mouse iso-miR and iso-moR variation

13 July 2018

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miRNA arm selection and isomiR distribution in gastric cancer

13 July 2018

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Complexity of murine cardiomyocyte miRNA biogenesis, sequence variant expression and function

13 July 2018

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Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection

13 July 2018

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microRNA regulation of inflammatory responses

13 July 2018

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MicroRNAs and their isomiRs function cooperatively to target common biological pathways

13 July 2018

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Systematic discovery of TLR signaling components delineates viral-sensing circuits

13 July 2018

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Comparative miRNA expression profiles in individuals with latent and active tuberculosis

13 July 2018

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Circulating microRNAs in patients with active pulmonary tuberculosis

13 July 2018

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Mycobacterium tuberculosis lipomannan blocks TNF biosynthesis by regulating macrophage MAPK-activated protein kinase 2 (MK2) and microRNA miR-125b.

13 July 2018

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Alternative miRNA biogenesis pathways and the interpretation of core miRNA pathway mutants

13 July 2018

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miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

13 July 2018

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Viruses and microRNAs: RISCy interactions with serious consequences

13 July 2018

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Integrated microRNA-mRNA-analysis of human monocyte derived macrophages upon Mycobacterium avium subsp. hominissuis infection

13 July 2018

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Human macrophage responses to clinical isolates from the Mycobacterium tuberculosis complex discriminate between ancient and modern lineages

13 July 2018

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MicroRNAs: the fine-tuners of Toll-like receptor signalling

13 July 2018

1 reference

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Gene silencing by microRNAs: contributions of translational repression and mRNA decay

13 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

MicroRNA evolution by arm switching

13 July 2018

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starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data

13 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

Differential expression analysis for sequence count data

13 July 2018

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Complexity of the microRNA repertoire revealed by next-generation sequencing

13 July 2018

1 reference

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Functional shifts in insect microRNA evolution

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

Dynamic isomiR regulation in Drosophila development

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness

13 July 2018

1 reference

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The widespread regulation of microRNA biogenesis, function and decay

13 July 2018

1 reference

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A myriad of miRNA variants in control and Huntington's disease brain regions detected by massively parallel sequencing

13 July 2018

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Mammalian microRNAs: experimental evaluation of novel and previously annotated genes

13 July 2018

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13 July 2018

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Physiological and pathological roles for microRNAs in the immune system

13 July 2018

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Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development

13 July 2018

1 reference

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Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

13 July 2018

1 reference

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Lost in translation: an assessment and perspective for computational microRNA target identification

13 July 2018

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Causes and consequences of microRNA dysregulation in cancer

13 July 2018

1 reference

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Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses

13 July 2018

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Zcchc11-dependent uridylation of microRNA directs cytokine expression

13 July 2018

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ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data

13 July 2018

1 reference

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Expression profiling of microRNAs by deep sequencing

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

13 July 2018

1 reference

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Many roads to maturity: microRNA biogenesis pathways and their regulation

13 July 2018

1 reference

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Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2.

13 July 2018

1 reference

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MicroRNAs: target recognition and regulatory functions

13 July 2018

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WGCNA: an R package for weighted correlation network analysis

13 July 2018

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Most mammalian mRNAs are conserved targets of microRNAs

13 July 2018

1 reference

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Control of cell proliferation pathways by microRNAs

13 July 2018

1 reference

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A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

Control of M. tuberculosis ESAT-6 secretion and specific T cell recognition by PhoP

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

Regulation of progenitor cell proliferation and granulocyte function by microRNA-223

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

Micromanagement of the immune system by microRNAs

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

MicroRNA targeting specificity in mammals: determinants beyond seed pairing

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

Global variation in copy number in the human genome

13 July 2018

1 reference

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MicroRNA signatures in human cancers

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

STEM: a tool for the analysis of short time series gene expression data

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

Clustering short time series gene expression data

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

Yersinia outer proteins: role in modulation of host cell signaling responses and pathogenesis

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

Insights into host responses against pathogens from transcriptional profiling.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

MicroRNAs: genomics, biogenesis, mechanism, and function

13 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

13 July 2018

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1005064

Prediction of mammalian microRNA targets

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

MicroRNAs modulate hematopoietic lineage differentiation

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

Functional siRNAs and miRNAs Exhibit Strand Bias

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

Asymmetry in the assembly of the RNAi enzyme complex

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

DC-SIGN: escape mechanism for pathogens

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

Unique gene expression profiles of human macrophages and dendritic cells to phylogenetically distinct parasites

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4368565

Identification of a novel role of ESAT-6-dependent miR-155 induction during infection of macrophages with Mycobacterium tuberculosis.

13 July 2018

1 reference

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Analysis of microRNA expression profiling identifies miR-155 and miR-155* as potential diagnostic markers for active tuberculosis: a preliminary study.

26 September 2018

1 reference

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Modulation of T cell cytokine production by miR-144* with elevated expression in patients with pulmonary tuberculosis

26 September 2018

1 reference

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Loss of RD1 contributed to the attenuation of the live tuberculosis vaccines Mycobacterium bovis BCG and Mycobacterium microti

26 September 2018

1 reference

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AD Model Builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models

26 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1005064

The plasticity of dendritic cell responses to pathogens and their components

21 January 2018

1 reference

12 December 2020

The microRNA miR-29 controls innate and adaptive immune responses to intracellular bacterial infection by targeting interferon-γ

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12 December 2020

Altered microRNA expression levels in mononuclear cells of patients with pulmonary and pleural tuberculosis and their relation with components of the immune response

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ESTIMATING F-STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE.

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12 December 2020

10.1371/JOURNAL.PGEN.1005064

Identifiers

DOI

1 reference

7 August 2017

1 reference

7 August 2017

1 reference

PubMed ID

25793259