(Q35202765)

7 August 2017

title

Direct inference of protein-DNA interactions using compressed sensing methods (English)

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7 August 2017

2

Harley H McAdams

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author name string

Mohammed AlQuraishi

series ordinal

1

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7 August 2017

language of work or name

English

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publication date

8 August 2011

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Proceedings of the National Academy of Sciences of the United States of America

7 August 2017

published in

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7 August 2017

volume

108

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7 August 2017

issue

36

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7 August 2017

page(s)

14819-14824

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Regularization Paths for Generalized Linear Models via Coordinate Descent

7 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169146

Diversity and complexity in DNA recognition by transcription factors

28 July 2018

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Prediction of TF target sites based on atomistic models of protein-DNA complexes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169146

Identification of DNA-binding protein target sequences by physical effective energy functions: free energy analysis of lambda repressor-DNA complexes

28 July 2018

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Energetics of protein-DNA interactions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169146

What is a desirable statistical energy function for proteins and how can it be obtained?

28 July 2018

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The experimental survey of protein-folding energy landscapes

28 July 2018

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PINT: Protein-protein Interactions Thermodynamic Database

28 July 2018

1 reference

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Protein-DNA binding specificity predictions with structural models

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169146

Potential energy functions for atomic-level simulations of water and organic and biomolecular systems

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169146

An experimentally determined protein folding energy landscape

28 July 2018

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From sequence to structure and back again: approaches for predicting protein-DNA binding

28 July 2018

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Force fields for protein simulations

28 July 2018

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3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

28 July 2018

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Protein folding: bringing theory and experiment closer together

28 July 2018

1 reference

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Structural analysis of conserved base pairs in protein-DNA complexes

28 July 2018

1 reference

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28 July 2018

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Structural classification of HTH DNA-binding domains and protein-DNA interaction modes

28 July 2018

1 reference

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A census of human transcription factors: function, expression and evolution

28 July 2018

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3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures

21 January 2018

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Connecting protein structure with predictions of regulatory sites.

21 January 2018

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Quantitative Robust Uncertainty Principles and Optimally Sparse Decompositions

21 January 2018

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21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1106460108

21 January 2018

Identifiers

DOI

10.1073/PNAS.1106460108

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7 August 2017

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7 August 2017

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