(Q35254905)

7 August 2017

GBshape: a genome browser database for DNA shape annotations (English)

1 reference

7 August 2017

0 references

1 reference

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25326329%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

author name string

Tsu-Pei Chiu

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25326329%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Lin Yang

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25326329%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Tianyin Zhou

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25326329%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Bradley J Main

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25326329%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Stephen C J Parker

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25326329%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Sergey V Nuzhdin

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25326329%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Remo Rohs

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25326329%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

language of work or name

English

0 references

publication date

17 October 2014

1 reference

7 August 2017

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25326329%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

volume

43

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25326329%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

issue

Database issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25326329%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

page(s)

D103-9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25326329%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

6 June 2020

copyright license

start time

9 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Comparative analysis of metazoan chromatin organization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

Absence of a simple code: how transcription factors read the genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

Role of DNA sequence based structural features of promoters in transcription initiation and gene expression.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

Conformations of p53 response elements in solution deduced using site-directed spin labeling and Monte Carlo sampling.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

The UCSC Genome Browser database: 2014 update

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

TFBSshape: a motif database for DNA shape features of transcription factor binding sites

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

Probing DNA shape and methylation state on a genomic scale with DNase I.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

Mechanism of Origin DNA Recognition and Assembly of an Initiator-Helicase Complex by SV40 Large Tumor Antigen

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

Systematic localization of common disease-associated variation in regulatory DNA

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

A flexible integrative approach based on random forest improves prediction of transcription factor binding sites

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

Widespread site-dependent buffering of human regulatory polymorphism

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

Saccharomyces Genome Database: the genomics resource of budding yeast

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

Reference-guided assembly of four diverse Arabidopsis thaliana genomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

DNA shape, genetic codes, and evolution

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

Use of structural DNA properties for the prediction of transcription-factor binding sites in Escherichia coli

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

Local DNA topography correlates with functional noncoding regions of the human genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

Distinct modes of regulation by chromatin encoded through nucleosome positioning signals

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

PlasmoDB: a functional genomic database for malaria parasites

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

Nucleosome organization in the Drosophila genome.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

Construction of a genome-scale structural map at single-nucleotide resolution

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

Detection of DNA structural motifs in functional genomic elements.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

A genomic code for nucleosome positioning

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

Escherichia coli K-12: a cooperatively developed annotation snapshot--2005

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

Molecular flexibility in ab initio drug docking to DNA: binding-site and binding-mode transitions in all-atom Monte Carlo simulations

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

DNA strand breaking by the hydroxyl radical is governed by the accessible surface areas of the hydrogen atoms of the DNA backbone

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384032

The role of DNA shape in protein-DNA recognition

27 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU977

Origins of specificity in protein-DNA recognition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU977

Improved predictions of transcription factor binding sites using physicochemical features of DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU977

DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU977

Structural and energetic origins of sequence-specific DNA bending: Monte Carlo simulations of papillomavirus E2-DNA binding sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU977

A map of minor groove shape and electrostatic potential from hydroxyl radical cleavage patterns of DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU977

Transcription start site evolution in Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU977

Functional Specificity of a Hox Protein Mediated by the Recognition of Minor Groove Structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU977

Structural studies of p53 inactivation by DNA-contact mutations and its rescue by suppressor mutations via alternative protein-DNA interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU977

Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU977

21 January 2018

Identifiers

DOI

10.1093/NAR/GKU977

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25326329%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/ChiuYZMPNTR15

6 June 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25326329%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25326329%20AND%20SRC:MED&resulttype=core&format=json