Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q35038701)
Watch
English
DNA shape, genetic codes, and evolution
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
3112471
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439813%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
review article
1 reference
stated in
Europe PubMed Central
title
DNA shape, genetic codes, and evolution
(English)
1 reference
stated in
Europe PubMed Central
PMCID
3112471
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439813%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
author
Thomas D. Tullius
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
3112471
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439813%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
author name string
Stephen C J Parker
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
3112471
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439813%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
publication date
23 March 2011
1 reference
stated in
Europe PubMed Central
PMCID
3112471
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439813%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
published in
Current Opinion in Structural Biology
1 reference
stated in
Europe PubMed Central
PMCID
3112471
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439813%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
volume
21
1 reference
stated in
Europe PubMed Central
PMCID
3112471
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439813%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
issue
3
1 reference
stated in
Europe PubMed Central
PMCID
3112471
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439813%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
page(s)
342-347
1 reference
stated in
Europe PubMed Central
PMCID
3112471
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439813%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
cites work
Widespread compensatory evolution conserves DNA-encoded nucleosome organization in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Identification of functional elements and regulatory circuits by Drosophila modENCODE
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Functional conservation of nucleosome formation selectively biases presumably neutral molecular variation in yeast genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Global epigenomic analysis of primary human pancreatic islets provides insights into type 2 diabetes susceptibility loci
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Context dependent substitution biases vary within the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Overlapping codes within protein-coding sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Highly redundant function of multiple AT-rich sequences as core promoter elements in the TATA-less RPS5 promoter of Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Deep sequencing analysis of mutations resulting from the incorporation of dNTP analogs.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Massive turnover of functional sequence in human and other mammalian genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Human NPY promoter variation rs16147:T>C as a moderator of prefrontal NPY gene expression and negative affect
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Genes, mutations, and human inherited disease at the dawn of the age of personalized genomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Genomic medicine--an updated primer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
The shape of the DNA minor groove directs binding by the DNA-bending protein Fis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Scanning for the signatures of positive selection for human-specific insertions and deletions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Genome-wide synteny through highly sensitive sequence alignment: Satsuma
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Two frequenins in Drosophila: unveiling the evolutionary history of an unusual neuronal calcium sensor (NCS) duplication
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Conserved expression without conserved regulatory sequence: the more things change, the more they stay the same
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Chromatin 'programming' by sequence--is there more to the nucleosome code than %GC?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
G+C content dominates intrinsic nucleosome occupancy
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Comparative genomics of gene regulation-conservation and divergence of cis-regulatory information.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
The role of DNA shape in protein-DNA recognition
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
The coexistence of the nucleosome positioning code with the genetic code on eukaryotic genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Upcoming challenges for multiple sequence alignment methods in the high-throughput era
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
What controls nucleosome positions?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Nucleosome positioning: how is it established, and why does it matter?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Nuance in the double-helix and its role in protein-DNA recognition.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Local DNA topography correlates with functional noncoding regions of the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Signatures of Protein-DNA Recognition in Free DNA Binding Sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Poly(dA:dT) tracts: major determinants of nucleosome organization
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Nucleosome positioning and gene regulation: advances through genomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
A regulatory module embedded in the coding region of Hoxa2 controls expression in rhombomere 2
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
The DNA-encoded nucleosome organization of a eukaryotic genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Insights into protein-DNA interactions through structure network analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Screening reveals conserved and nonconserved transcriptional regulatory elements including an E3/E4 allele-dependent APOE coding region enhancer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Selective constraints in experimentally defined primate regulatory regions.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
DNA physical properties determine nucleosome occupancy from yeast to fly.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
A transcriptional enhancer from the coding region of ADAMTS5
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
An ultraconserved Hox-Pbx responsive element resides in the coding sequence of Hoxa2 and is active in rhombomere 4.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Construction of a genome-scale structural map at single-nucleotide resolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Evolution at two levels in humans and chimpanzees
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
8 July 2018
Flexibility of the genetic code with respect to DNA structure
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112471
retrieved
25 October 2018
Nucleosome positions predicted through comparative genomics
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21439813
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The molecular evolution of nucleosome positioning through sequence-dependent deformation of the DNA polymer
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21439813
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A structural similarity analysis of double-helical DNA
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21439813
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Inferring natural selection on fine-scale chromatin organization in yeast
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21439813
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.SBI.2011.03.002
1 reference
stated in
Europe PubMed Central
PMCID
3112471
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439813%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
PMCID
3112471
1 reference
stated in
Europe PubMed Central
PMCID
3112471
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439813%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
PubMed ID
21439813
1 reference
stated in
Europe PubMed Central
PMCID
3112471
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439813%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
ResearchGate publication ID
50866296
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit