(Q35260522)

7 August 2017

title

Profound differences in virus population genetics correspond to protection from CD4 decline resulting from feline lentivirus coinfection (English)

1 reference

7 August 2017

1 reference

4

Sue Vandewoude

1 reference

7 August 2017

Abinash Padhi

1

1 reference

7 August 2017

Howard Ross

series ordinal

2

1 reference

7 August 2017

Julie Terwee

series ordinal

3

1 reference

7 August 2017

Mary Poss

series ordinal

5

1 reference

7 August 2017

language of work or name

1 reference

10 December 2010

1 reference

7 August 2017

1 reference

7 August 2017

volume

2

1 reference

7 August 2017

issue

12

1 reference

7 August 2017

page(s)

2663-2680

1 reference

Creative Commons Attribution 4.0 International

7 August 2017

copyright license

start time

10 December 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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12 July 2018

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Multivariate statistical analyses demonstrate unique host immune responses to single and dual lentiviral infection

12 July 2018

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Compartmentalization of HIV-1 within the female genital tract is due to monotypic and low-diversity variants not distinct viral populations

12 July 2018

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Defining APOBEC3 expression patterns in human tissues and hematopoietic cell subsets

12 July 2018

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Reduced genetic diversity in lymphoid and central nervous system tissues and selection-induced tissue-specific compartmentalization of neuropathogenic SIVsmmFGb during acute infection

12 July 2018

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12 July 2018

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12 July 2018

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Genetic drift of HIV populations in culture

12 July 2018

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Prevention of immunodeficiency virus induced CD4+ T-cell depletion by prior infection with a non-pathogenic virus

12 July 2018

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12 July 2018

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PAML 4: phylogenetic analysis by maximum likelihood

12 July 2018

1 reference

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Adaptation of HIV-1 depends on the host-cell environment

12 July 2018

1 reference

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Analysis of genetic bottlenecks during horizontal transmission of Cucumber mosaic virus

12 July 2018

1 reference

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Feline lentivirus evolution in cross-species infection reveals extensive G-to-A mutation and selection on key residues in the viral polymerase

12 July 2018

1 reference

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Bayesian coalescent inference of past population dynamics from molecular sequences

12 July 2018

1 reference

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Not so different after all: a comparison of methods for detecting amino acid sites under selection

12 July 2018

1 reference

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Genetic bottlenecks reduce population variation in an experimental RNA virus population

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Characterization of a highly pathogenic molecular clone of feline immunodeficiency virus clade C.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

New insights into the role of Vif in HIV-1 replication.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Single-strand specificity of APOBEC3G accounts for minus-strand deamination of the HIV genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Influence of random genetic drift on human immunodeficiency virus type 1 env evolution during chronic infection

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

The antiretroviral enzyme APOBEC3G is degraded by the proteasome in response to HIV-1 Vif

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

THE RELATION OF RECOMBINATION TO MUTATIONAL ADVANCE

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

DNA deamination mediates innate immunity to retroviral infection

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Roles of uracil-DNA glycosylase and dUTPase in virus replication

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Compartmentalization of surface envelope glycoprotein of human immunodeficiency virus type 1 during acute and chronic infection

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Replication and compartmentalization of HIV-1 in kidney epithelium of patients with HIV-associated nephropathy

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Genetic drift and within-host metapopulation dynamics of HIV-1 infection

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Unusual distribution of mutations associated with serial bottleneck passages of human immunodeficiency virus type 1

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Drastic fitness loss in human immunodeficiency virus type 1 upon serial bottleneck events.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

MODELTEST: testing the model of DNA substitution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Evolution of envelope sequences from the genital tract and peripheral blood of women infected with clade A human immunodeficiency virus type 1.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Human immunodeficiency virus in semen arises from a genetically distinct virus reservoir

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Human immunodeficiency virus type 1 populations in blood and semen

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Recovery of replication-competent HIV despite prolonged suppression of plasma viremia

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Genetic drift can dominate short-term human immunodeficiency virus type 1 nef quasispecies evolution in vivo

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

In vivo compartmentalization of human immunodeficiency virus: evidence from the examination of pol sequences from autopsy tissues

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Basic concepts in RNA virus evolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Genetic bottlenecks and population passages cause profound fitness differences in RNA viruses.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Increased mutation frequency of feline immunodeficiency virus lacking functional deoxyuridine-triphosphatase

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Exponential increases of RNA virus fitness during large population transmissions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Natural protection against HIV-1 infection provided by HIV-2.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Fitness of RNA virus decreased by Muller's ratchet

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Rapid fitness losses in mammalian RNA virus clones due to Muller's ratchet

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

On the number of segregating sites in genetical models without recombination

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

The distribution of feline immunodeficiency virus in tissue compartments of feral domestic cats.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

HyperPack: a software package for the study of levels, contexts, and patterns of APOBEC-mediated hypermutation in HIV.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Effect of coinfection with GB virus C on survival among patients with HIV infection

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185597

Detecting hypermutations in viral sequences with an emphasis on G --> A hypermutation

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21994636

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Compartmentalization of HIV-1 between Breast Milk and Blood of HIV-Infected Mothers

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21994636

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3390/V2122663

1 reference

7 August 2017

1 reference

7 August 2017

1 reference