(Q35338420)

7 August 2017

title

Systematic functional profiling of transcription factor networks in Cryptococcus neoformans (English)

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7 August 2017

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Putative zinc finger transcription factor

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Putative zinc finger transcription factor

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GATA type zinc finger protein asd-4

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bZip transcription factor, putative

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pathway-specific nitrogen regulator

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GATA transcription factor, capsule-independent antiphagocytic protein

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Putative Zn2-Cys6 zinc-finger transcription factor

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transcriptional regulatory protein

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transcriptional activator

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activating transcription factor

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transcriptional repressor NF-X1

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Fungal Zn(2)-Cys(6) binuclear cluster domain protein

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hepatocyte nuclear factor

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transcriptional regulator

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transcriptional regulator, variant

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transcriptional regulator Nrg1

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Putative Zn(II)2Cys6 transcription factor

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Putative Zn(II)2Cys6 transcription factor

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Alpha cell-type homeodomain transcription factor

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histone demethylase JARID1

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transcription factor STE12

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transcription factor

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Transcriptional activator HAP2, putative

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Putative Zn2-Cys6 zinc-finger transcription factor

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hypothetical protein, variant 1

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hypothetical protein, variant 2

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white collar 2 protein

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Fork head protein homolog 1, putative

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Fork head protein homolog 1, putative

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forkhead transcription factor 3

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forkhead domain-containing protein

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specific transcriptional repressor

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bZip transcription factor, putative

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Metal-binding regulatory protein CUF1

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osomolarity two-component system, response regulator SKN7

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exodeoxyribonuclease III

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specific RNA polymerase II transcription factor

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Putative zinc finger transcription factor

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specific RNA polymerase II transcription factor

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transcriptional regulatory protein

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transcriptional regulatory protein, variant

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bHLH family transcription factor

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sterol regulatory element-binding protein

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multiprotein-bridging factor 1

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nuclear protein, variant

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LIM-homeobox protein, variant

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LIM-homeobox protein

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GATA family transcription factor

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transcriptional adapter 2-alpha

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GATA family transcription factor

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C2H2 zinc finger protein Zas1A

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E3 SUMO-protein ligase PIAS1

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transcription factor

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RNA polymerase II transcription factor

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Centromere DNA-binding protein complex CBF3 subunit B, putative

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fungal specific transcription factor

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specific RNA polymerase II transcription factor

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RNA polymerase II transcription factor

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pH-response transcription factor pacC/RIM101

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DnaJ-like cochaperone

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Cryptococcus neoformans

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Guilhem Janbon

22

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Yong-Sun Bahn

object named as

Yong-Sun Bahn

30

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Joseph Heitman

26

object named as

Joseph Heitman

1 reference

7 August 2017

Kwang-Woo Jung

1

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7 August 2017

Dong-Hoon Yang

2

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7 August 2017

Shinae Maeng

3

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7 August 2017

Kyung-Tae Lee

4

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7 August 2017

Yee-Seul So

5

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7 August 2017

Joohyeon Hong

6

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7 August 2017

Jaeyoung Choi

7

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7 August 2017

Hyo-Jeong Byun

8

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7 August 2017

Hyelim Kim

9

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7 August 2017

Soohyun Bang

10

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7 August 2017

Min-Hee Song

11

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7 August 2017

Jang-Won Lee

12

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7 August 2017

Min Su Kim

13

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7 August 2017

Seo-Young Kim

14

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7 August 2017

Je-Hyun Ji

15

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7 August 2017

Goun Park

16

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7 August 2017

Hyojeong Kwon

17

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7 August 2017

Suyeon Cha

18

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7 August 2017

Gena Lee Meyers

19

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7 August 2017

Li Li Wang

20

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7 August 2017

Jooyoung Jang

21

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7 August 2017

Gloria Adedoyin

23

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7 August 2017

Taeyup Kim

24

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7 August 2017

Anna K Averette

25

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7 August 2017

Eunji Cheong

27

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7 August 2017

Yong-Hwan Lee

28

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7 August 2017

Yin-Won Lee

29

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7 August 2017

language of work or name

English

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publication date

7 April 2015

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7 August 2017

published in

Nature Communications

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7 August 2017

volume

6

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7 August 2017

page(s)

6757

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Creative Commons Attribution 4.0 International

7 August 2017

copyright license

start time

7 April 2015

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation

27 July 2018

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Stress signaling pathways for the pathogenicity of Cryptococcus

27 July 2018

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27 July 2018

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Factors required for activation of urease as a virulence determinant in Cryptococcus neoformans.

27 July 2018

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27 July 2018

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Toward an integrated model of capsule regulation in Cryptococcus neoformans

27 July 2018

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27 July 2018

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A flucytosine-responsive Mbp1/Swi4-like protein, Mbs1, plays pleiotropic roles in antifungal drug resistance, stress response, and virulence of Cryptococcus neoformans

27 July 2018

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Catch me if you can: phagocytosis and killing avoidance by Cryptococcus neoformans.

27 July 2018

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A phenome-based functional analysis of transcription factors in the cereal head blight fungus, Fusarium graminearum.

27 July 2018

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Cryptococcal titan cell formation is regulated by G-protein signaling in response to multiple stimuli

27 July 2018

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Role of phospholipases in fungal fitness, pathogenicity, and drug development - lessons from cryptococcus neoformans

27 July 2018

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Cryptococcus neoformans requires a functional glycolytic pathway for disease but not persistence in the host

27 July 2018

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A novel specificity protein 1 (SP1)-like gene regulating protein kinase C-1 (Pkc1)-dependent cell wall integrity and virulence factors in Cryptococcus neoformans

27 July 2018

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A major role for capsule-independent phagocytosis-inhibitory mechanisms in mammalian infection by Cryptococcus neoformans.

27 July 2018

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Repression of ergosterol biosynthesis is essential for stress resistance and is mediated by the Hog1 MAP kinase and the Mot3 and Rox1 transcription factors.

27 July 2018

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Ste50 adaptor protein governs sexual differentiation of Cryptococcus neoformans via the pheromone-response MAPK signaling pathway

27 July 2018

1 reference

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Role of an Expanded Inositol Transporter Repertoire in Cryptococcus neoformans Sexual Reproduction and Virulence

27 July 2018

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Cryptococcal cell morphology affects host cell interactions and pathogenicity

27 July 2018

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Systematic screens of a Candida albicans homozygous deletion library decouple morphogenetic switching and pathogenicity

27 July 2018

1 reference

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Roles of calcineurin and Crz1 in antifungal susceptibility and virulence of Candida glabrata

27 July 2018

1 reference

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Clinical practice guidelines for the management of cryptococcal disease: 2010 update by the infectious diseases society of america.

27 July 2018

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A phenotypic profile of the Candida albicans regulatory network

27 July 2018

1 reference

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Estimation of the current global burden of cryptococcal meningitis among persons living with HIV/AIDS

27 July 2018

1 reference

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SNUGB: a versatile genome browser supporting comparative and functional fungal genomics

27 July 2018

1 reference

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Systematic genetic analysis of virulence in the human fungal pathogen Cryptococcus neoformans

27 July 2018

1 reference

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FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors

27 July 2018

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The evolution of fungal drug resistance: modulating the trajectory from genotype to phenotype.

27 July 2018

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DBD--taxonomically broad transcription factor predictions: new content and functionality

27 July 2018

1 reference

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Dating divergences in the Fungal Tree of Life: review and new analyses

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Sre1p, a regulator of oxygen sensing and sterol homeostasis, is required for virulence in Cryptococcus neoformans

27 July 2018

1 reference

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A link between virulence and homeostatic responses to hypoxia during infection by the human fungal pathogen Cryptococcus neoformans

27 July 2018

1 reference

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Druggable signaling proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Transcription factor Nrg1 mediates capsule formation, stress response, and pathogenesis in Cryptococcus neoformans.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

The biology of the Cryptococcus neoformans species complex

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

DBD: a transcription factor prediction database

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Galleria mellonella as a model system to study Cryptococcus neoformans pathogenesis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Light controls growth and development via a conserved pathway in the fungal kingdom

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Transcriptional network of multiple capsule and melanin genes governed by the Cryptococcus neoformans cyclic AMP cascade

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Improved prediction of signal peptides: SignalP 3.0

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Feature-based prediction of non-classical and leaderless protein secretion

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

A PCR-based strategy to generate integrative targeting alleles with large regions of homology.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Functional profiling of the Saccharomyces cerevisiae genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Capsule and melanin synthesis in Cryptococcus neoformans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Finding nuclear localization signals

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Flucytosine: a review of its pharmacology, clinical indications, pharmacokinetics, toxicity and drug interactions

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

A hidden Markov model for predicting transmembrane helices in protein sequences

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Literature-based gene curation and proposed genetic nomenclature for cryptococcus

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Titan cells in Cryptococcus neoformans: cells with a giant impact

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Unique evolution of the UPR pathway with a novel bZIP transcription factor, Hxl1, for controlling pathogenicity of Cryptococcus neoformans

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Fungal cell gigantism during mammalian infection

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Comparative transcriptome analysis of the CO2 sensing pathway via differential expression of carbonic anhydrase in Cryptococcus neoformans

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

An efficient gene-disruption method in Cryptococcus neoformans by double-joint PCR with NAT-split markers.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

A copper-responsive factor gene CUF1 is required for copper induction of laccase in Cryptococcus neoformans.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Functional characterization of the Aspergillus fumigatus CRZ1 homologue, CrzA.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Iron regulation of the major virulence factors in the AIDS-associated pathogen Cryptococcus neoformans

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

A unique fungal two-component system regulates stress responses, drug sensitivity, sexual development, and virulence of Cryptococcus neoformans

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Urease expression by Cryptococcus neoformans promotes microvascular sequestration, thereby enhancing central nervous system invasion

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Predicting subcellular localization of proteins based on their N-terminal amino acid sequence

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

Gene disruption by biolistic transformation in serotype D strains of Cryptococcus neoformans.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

The Cryptococcus neoformans STE12alpha gene: a putative Saccharomyces cerevisiae STE12 homologue that is mating type specific

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391232

26 September 2018

Identifiers

DOI

10.1038/NCOMMS7757

1 reference

7 August 2017

0 references

1 reference

7 August 2017

1 reference