(Q35408902)

8 August 2017

Motifs emerge from function in model gene regulatory networks (English)

1 reference

8 August 2017

1

Z Burda

1 reference

8 August 2017

A Krzywicki

2

1 reference

8 August 2017

O C Martin

series ordinal

3

1 reference

8 August 2017

M Zagorski

series ordinal

4

1 reference

8 August 2017

language of work or name

English

0 references

publication date

29 September 2011

1 reference

Proceedings of the National Academy of Sciences of the United States of America

8 August 2017

1 reference

8 August 2017

108

1 reference

8 August 2017

17263-17268

1 reference

8 August 2017

42

1 reference

Noncooperative interactions between transcription factors and clustered DNA binding sites enable graded transcriptional responses to environmental inputs

8 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

What controls nucleosome positions?

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Multistable decision switches for flexible control of epigenetic differentiation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

What determines the assembly of transcriptional network motifs in Escherichia coli?

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

A computational model for understanding stem cell, trophectoderm and endoderm lineage determination

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Boolean network model predicts cell cycle sequence of fission yeast

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Deriving structure from evolution: metazoan segmentation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Probing transcription factor dynamics at the single-molecule level in a living cell

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Network motifs: theory and experimental approaches

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Genetic reconstruction of a functional transcriptional regulatory network

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Robustness can evolve gradually in complex regulatory gene networks with varying topology

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Sexual reproduction selects for robustness and negative epistasis in artificial gene networks

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Real-time kinetics of gene activity in individual bacteria

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Explicit equilibrium modeling of transcription-factor binding and gene regulation.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Contributions of low molecule number and chromosomal positioning to stochastic gene expression

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

An extended transcriptional regulatory network of Escherichia coli and analysis of its hierarchical structure and network motifs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Reconstruction of microbial transcriptional regulatory networks

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

The yeast cell-cycle network is robustly designed

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Design of genetic networks with specified functions by evolution in silico.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Structure and function of the feed-forward loop network motif

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Network motifs: simple building blocks of complex networks

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Transcriptional regulatory networks in Saccharomyces cerevisiae

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Physical constraints and functional characteristics of transcription factor-DNA interaction.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Specificity and stability in topology of protein networks

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Network motifs in the transcriptional regulation network of Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Construction of a genetic toggle switch in Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

A synthetic oscillatory network of transcriptional regulators

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Specificity, free energy and information content in protein-DNA interactions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

On the specificity of DNA-protein interactions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Lambda repressor recognizes the approximately 2-fold symmetric half-operator sequences asymmetrically

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198326

Genetdes: automatic design of transcriptional networks.

12 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1109435108

Topological evolution of dynamical networks: global criticality from local dynamics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1109435108

A gene regulatory network model for cell-fate determination during Arabidopsis thaliana flower development that is robust and recovers experimental gene expression profiles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1109435108

Equation of State Calculations by Fast Computing Machines

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1109435108

From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1109435108

The temporal response of the Mycobacterium tuberculosis gene regulatory network during growth arrest.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1109435108

Circadian clocks limited by noise

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21960444

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Distribution of essential interactions in model gene regulatory networks under mutation-selection balance

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21960444

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

DOES EVOLUTIONARY PLASTICITY EVOLVE?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21960444

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1109435108

1 reference

8 August 2017

0 references

1 reference

1 reference

8 August 2017

1 reference