(Q35468516)

8 August 2017

title

Enhancers regulate progression of development in mammalian cells (English)

1 reference

8 August 2017

2

1 reference

8 August 2017

Anna-Lena Kranz

1

1 reference

8 August 2017

Rainer König

series ordinal

3

1 reference

8 August 2017

language of work or name

English

0 references

publication date

23 July 2011

1 reference

8 August 2017

published in

Nucleic Acids Research

1 reference

8 August 2017

volume

39

1 reference

8 August 2017

issue

20

1 reference

8 August 2017

page(s)

8689-8702

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

8 August 2017

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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27 July 2018

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Measuring spatial preferences at fine-scale resolution identifies known and novel cis-regulatory element candidates and functional motif-pair relationships

27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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Distinct transcriptional MYCN/c-MYC activities are associated with spontaneous regression or malignant progression in neuroblastomas

27 July 2018

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Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing

27 July 2018

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The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site

27 July 2018

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FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription

27 July 2018

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The emerging roles of forkhead box (Fox) proteins in cancer

27 July 2018

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

27 July 2018

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Position and distance specificity are important determinants of cis-regulatory motifs in addition to evolutionary conservation

27 July 2018

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The gateway to transcription: identifying, characterizing and understanding promoters in the eukaryotic genome

27 July 2018

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27 July 2018

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In vivo enhancer analysis of human conserved non-coding sequences

27 July 2018

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The Foxa family of transcription factors in development and metabolism

27 July 2018

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Rank-based methods as a non-parametric alternative of the T-statistic for the analysis of biological microarray data

27 July 2018

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Binding sites for metabolic disease related transcription factors inferred at base pair resolution by chromatin immunoprecipitation and genomic microarrays

27 July 2018

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Stage-specific regulation of respiratory epithelial cell differentiation by Foxa1

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

The initiation of liver development is dependent on Foxa transcription factors

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Cdx2 is required for correct cell fate specification and differentiation of trophectoderm in the mouse blastocyst

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

27 July 2018

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Compensatory roles of Foxa1 and Foxa2 during lung morphogenesis

27 July 2018

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Highly conserved non-coding sequences are associated with vertebrate development

27 July 2018

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Gene regulatory network controlling embryonic specification in the sea urchin

27 July 2018

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cis-Regulatory control circuits in development

27 July 2018

1 reference

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Ultraconserved Elements in the Human Genome

27 July 2018

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27 July 2018

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Scanning Human Gene Deserts for Long-Range Enhancers

27 July 2018

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Transcription regulation and animal diversity

27 July 2018

1 reference

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Tbx1 is regulated by tissue-specific forkhead proteins through a common Sonic hedgehog-responsive enhancer

27 July 2018

1 reference

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27 July 2018

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Promoter-proximal tethering elements regulate enhancer-promoter specificity in the Drosophila Antennapedia complex

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

A genomic regulatory network for development

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Foxl1 controls the Wnt/beta-catenin pathway by modulating the expression of proteoglycans in the gut

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

The winged helix transcription factor Hfh2 is expressed in neural crest and spinal cord during mouse development

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Mutation of the mouse hepatocyte nuclear factor/forkhead homologue 4 gene results in an absence of cilia and random left-right asymmetry

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Silencing of human fetal globin expression is impaired in the absence of the adult beta-globin gene activator protein EKLF.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

De novo DNA cytosine methyltransferase activities in mouse embryonic stem cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

The winged-helix transcription factor HNF-3 beta is required for notochord development in the mouse embryo

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

HNF-3 beta is essential for node and notochord formation in mouse development

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Expression of a β-globin gene is enhanced by remote SV40 DNA sequences

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Stable propagation of the active transcriptional state of an immunoglobulin mu gene requires continuous enhancer function

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Developmental expression of Sp1 in the mouse

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

DNA looping between sites for transcriptional activation: self-association of DNA-bound Sp1

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Hepatocyte nuclear factor 3 alpha belongs to a gene family in mammals that is homologous to the Drosophila homeotic gene fork head

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Two regulatory proteins that bind to the basic transcription element (BTE), a GC box sequence in the promoter region of the rat P-4501A1 gene

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Targets and dynamics of promoter DNA methylation during early mouse development

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

ENCODE whole-genome data in the UCSC Genome Browser

26 September 2018

1 reference

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Machine learning based analyses on metabolic networks supports high-throughput knockout screens

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Ultraconservation identifies a small subset of extremely constrained developmental enhancers

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

SnapShot: forkhead transcription factors I.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Getting connected: analysis and principles of biological networks

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Observing local and global properties of metabolic pathways: 'load points' and 'choke points' in the metabolic networks

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

On the power of profiles for transcription factor binding site detection.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Clustering of DNA sequences in human promoters

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Distance preferences in the arrangement of binding motifs and hierarchical levels in organization of transcription regulatory information.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Variance stabilization applied to microarray data calibration and to the quantification of differential expression

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Transcription factor FoxA (HNF3) on a nucleosome at an enhancer complex in liver chromatin.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Ciliogenesis and left-right axis defects in forkhead factor HFH-4-null mice

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

The winged helix transcription factor Fkh10 is required for normal development of the inner ear.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Transcription factor Sp1 is essential for early embryonic development but dispensable for cell growth and differentiation

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Hepatic specification of the gut endoderm in vitro: cell signaling and transcriptional control.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

An active tissue-specific enhancer and bound transcription factors existing in a precisely positioned nucleosomal array.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203619

Bidirectional SV40 transcription mediated by tandem Sp1 binding interactions

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21785139

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Virtual identification of essential proteins within the protein interaction network of yeast

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21785139

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21785139

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKR602

1 reference

8 August 2017

1 reference

8 August 2017

1 reference