(Q35494186)

8 August 2017

title

Toward a general model for the evolutionary dynamics of gene duplicates (English)

1 reference

8 August 2017

main subject

Evolutionary dynamics

1 reference

Anke Konrad

1

1 reference

8 August 2017

Ashley I Teufel

series ordinal

2

1 reference

8 August 2017

Johan A Grahnen

series ordinal

3

1 reference

8 August 2017

David A Liberles

series ordinal

4

1 reference

8 August 2017

publication date

13 September 2011

1 reference

Genome Biology and Evolution

8 August 2017

published in

1 reference

8 August 2017

volume

3

1 reference

8 August 2017

page(s)

1197-1209

1 reference

Non-adaptive origins of interactome complexity

8 August 2017

cites work

1 reference

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Getting a full dose? Reconsidering sex chromosome dosage compensation in the silkworm, Bombyx mori

12 July 2018

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Modification of gene duplicability during the evolution of protein interaction network

12 July 2018

1 reference

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Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate

12 July 2018

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BISC: binary subcomplexes in proteins database

12 July 2018

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Transcriptional silencing functions of the yeast protein Orc1/Sir3 subfunctionalized after gene duplication

12 July 2018

1 reference

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A Bayesian approach for fast and accurate gene tree reconstruction

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

The evolution of gene duplications: classifying and distinguishing between models

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Divergence of exonic splicing elements after gene duplication and the impact on gene structures.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Cellular reactions to gene dosage imbalance: genomic, transcriptomic and proteomic effects

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Protein under-wrapping causes dosage sensitivity and decreases gene duplicability

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Evaluating dosage compensation as a cause of duplicate gene retention in Paramecium tetraurelia

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Insight into transcription factor gene duplication from Caenorhabditis elegans Promoterome-driven expression patterns.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Relating three-dimensional structures to protein networks provides evolutionary insights

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Evolution after gene duplication: models, mechanisms, sequences, systems, and organisms

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae?

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Intron gain and loss in segmentally duplicated genes in rice

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Expression divergence between duplicate genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Subfunctionalization of duplicated genes as a transition state to neofunctionalization

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Modeling gene and genome duplications in eukaryotes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Functional effects of a tandem duplication polymorphism in the 5'flanking region of the DRD4 gene

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Gene duplication: the genomic trade in spare parts

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Stochastic tunnels in evolutionary dynamics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Asymmetric sequence divergence of duplicate genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Dosage sensitivity and the evolution of gene families in yeast

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Divergence in the spatial pattern of gene expression between human duplicate genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

The evolutionary demography of duplicate genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Rapid divergence in expression between duplicate genes inferred from microarray data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Common exon duplication in animals and its role in alternative splicing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Automated ortholog inference from phylogenetic trees and calculation of orthology reliability

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

The probability of preservation of a newly arisen gene duplicate

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Transcription of eukaryotic protein-coding genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

The evolutionary fate and consequences of duplicate genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

The probability of duplicate gene preservation by subfunctionalization

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Preservation of duplicate genes by complementary, degenerative mutations

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

New Drosophila introns originate by duplication

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Binding constraints on the evolution of enzymes and signalling proteins: the important role of negative pleiotropy.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Dramatic change in function and expression pattern of a gene duplicated by polyploidy created a paternal effect gene in the Brassicaceae.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Whole-genome duplications in the ancestral vertebrate are detectable in the distribution of gene family sizes of tetrapod species

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

The power-law distribution of gene family size is driven by the pseudogenisation rate's heterogeneity between gene families

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Optimal gene trees from sequences and species trees using a soft interpretation of parsimony.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

The gain and loss of genes during 600 million years of vertebrate evolution

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Different age distribution patterns of human, nematode, and Arabidopsis duplicate genes

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Association of a duplicated repeat polymorphism in the 5'-untranslated region of the DRD4 gene with novelty seeking

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Origin of alternative splicing by tandem exon duplication

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

The two myostatin genes of Atlantic salmon (Salmo salar) are expressed in a variety of tissues

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

NOTUNG: a program for dating gene duplications and optimizing gene family trees

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

The evolution of functionally novel proteins after gene duplication.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Expansions of transgene repeats cause heterochromatin formation and gene silencing in Drosophila.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

The ambiguous boundary between genes and pseudogenes: the dead rise up, or do they?

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Analysis of Nuclear Receptor Pseudogenes in Vertebrates: How the Silent Tell Their Stories

15 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205605

Duplication of CaMV 35S Promoter Sequences Creates a Strong Enhancer for Plant Genes

15 November 2018

1 reference

12 December 2020

Mapping mutations on phylogenies

1 reference

12 December 2020

The pattern of evolution of smaller-scale gene duplicates in mammalian genomes is more consistent with neo- than subfunctionalisation

1 reference

12 December 2020

Exploring the etiology of haploinsufficiency

1 reference

12 December 2020

Enhancement of RNA synthesis by promoter duplication in tombusviruses

1 reference

12 December 2020

The origins of eukaryotic gene structure

1 reference

12 December 2020

Energy constraints on the evolution of gene expression

1 reference

12 December 2020

Identifiers

DOI

10.1093/GBE/EVR093

1 reference

8 August 2017

1 reference

8 August 2017

1 reference