(Q35529275)

8 August 2017

title

Characterization and identification of protein O-GlcNAcylation sites with substrate specificity (English)

1 reference

8 August 2017

Hsin-Yi Wu

1

1 reference

8 August 2017

Cheng-Tsung Lu

2

1 reference

8 August 2017

Hui-Ju Kao

3

1 reference

8 August 2017

Yi-Ju Chen

4

1 reference

8 August 2017

Yu-Ju Chen

5

1 reference

8 August 2017

Tzong-Yi Lee

6

1 reference

8 August 2017

language of work or name

1 reference

8 December 2014

1 reference

8 August 2017

1 reference

8 August 2017

volume

15 Suppl 16

1 reference

8 August 2017

page(s)

S1

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2105-15-s16-s1

8 August 2017

exact match

0 references

cites work

dbGSH: a database of S-glutathionylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

RegPhos 2.0: an updated resource to explore protein kinase-substrate phosphorylation networks in mammals

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Incorporating substrate sequence motifs and spatial amino acid composition to identify kinase-specific phosphorylation sites on protein three-dimensional structures

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

ViralPhos: incorporating a recursively statistical method to predict phosphorylation sites on virus proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

topPTM: a new module of dbPTM for identifying functional post-translational modifications in transmembrane proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

DbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

dbSNO: a database of cysteine S-nitrosylation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Global identification and characterization of both O-GlcNAcylation and phosphorylation at the murine synapse

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Tandem mass spectrometry identifies many mouse brain O-GlcNAcylated proteins including EGF domain-specific O-GlcNAc transferase targets

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Incorporating evolutionary information and functional domains for identifying RNA splicing factors in humans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

SNOSite: exploiting maximal dependence decomposition to identify cysteine S-nitrosylation with substrate site specificity

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Polycomb repressive complex 2 is necessary for the normal site-specific O-GlcNAc distribution in mouse embryonic stem cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

dbOGAP - an integrated bioinformatics resource for protein O-GlcNAcylation.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Enrichment and site mapping of O-linked N-acetylglucosamine by a combination of chemical/enzymatic tagging, photochemical cleavage, and electron transfer dissociation mass spectrometry

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Regulation of calcium/calmodulin-dependent kinase IV by O-GlcNAc modification.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Incorporating support vector machine for identifying protein tyrosine sulfation sites.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Cross-talk between GlcNAcylation and phosphorylation: site-specific phosphorylation dynamics in response to globally elevated O-GlcNAc

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

GPS 2.0, a tool to predict kinase-specific phosphorylation sites in hierarchy

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Probing the dynamics of O-GlcNAc glycosylation in the brain using quantitative proteomics

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Cycling of O-linked beta-N-acetylglucosamine on nucleocytoplasmic proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

O-linked N-acetylglucosamine proteomics of postsynaptic density preparations using lectin weak affinity chromatography and mass spectrometry

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

dbPTM: an information repository of protein post-translational modification

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

LOCSVMPSI: a web server for subcellular localization of eukaryotic proteins using SVM and profile of PSI-BLAST

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

O-GlcNAcylation regulates phosphorylation of tau: a mechanism involved in Alzheimer's disease

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

WebLogo: A Sequence Logo Generator

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

UniProt: the Universal Protein knowledgebase

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Dynamic interplay between O-glycosylation and O-phosphorylation of nucleocytoplasmic proteins: alternative glycosylation/phosphorylation of THR-58, a known mutational hot spot of c-Myc in lymphomas, is regulated by mitogens

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Glycosylation of nucleocytoplasmic proteins: signal transduction and O-GlcNAc

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

27 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

O-GlcNAc and the control of gene expression

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Protein secondary structure prediction based on position-specific scoring matrices

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

c-Myc target genes involved in cell growth, apoptosis, and metabolism

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Prediction of complete gene structures in human genomic DNA

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Hexosamines and insulin resistance

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Global identification of O-GlcNAc-modified proteins

27 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S16-S1

Cross-talk between GlcNAcylation and phosphorylation: roles in insulin resistance and glucose toxicity

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S16-S1

O-GlcNAcPRED: a sensitive predictor to capture protein O-GlcNAcylation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S16-S1

O-GLYCBASE version 4.0: a revised database of O-glycosylated proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S16-S1

PlantPhos: using maximal dependence decomposition to identify plant phosphorylation sites with substrate site specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S16-S1

Incorporating structural characteristics for identification of protein methylation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S16-S1

Exploiting maximal dependence decomposition to identify conserved motifs from a group of aligned signal sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S16-S1

Identifying protein phosphorylation sites with kinase substrate specificity on human viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S16-S1

Incorporating distant sequence features and radial basis function networks to identify ubiquitin conjugation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S16-S1

RVP-net: online prediction of real valued accessible surface area of proteins from single sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S16-S1

Real value prediction of solvent accessibility from amino acid sequence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S16-S1

Carboxylator: incorporating solvent-accessible surface area for identifying protein carboxylation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S16-S1

RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

VirusMINT: a viral protein interaction database

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Prediction of glycosylation across the human proteome and the correlation to protein function.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290634

Incorporating hidden Markov models for identifying protein kinase-specific phosphorylation sites

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25521204

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Surface accessibility of protein post-translational modifications

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25521204

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-15-S16-S1

1 reference

8 August 2017

DBLP publication ID

journals/bmcbi/WuLKCCL14

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

8 August 2017

1 reference