(Q35529751)

8 August 2017

title

Use B-factor related features for accurate classification between protein binding interfaces and crystal packing contacts (English)

1 reference

8 August 2017

Zhenhua Li

2

1 reference

ORCID Public Data File 2021

author name string

Qian Liu

series ordinal

1

1 reference

8 August 2017

Jinyan Li

series ordinal

3

1 reference

8 August 2017

publication date

8 December 2014

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8 August 2017

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8 August 2017

volume

15 Suppl 16

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8 August 2017

page(s)

S3

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Integrating water exclusion theory into β contacts to predict binding free energy changes and binding hot spots

8 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

Benchmarking protein-protein interface predictions: why you should care about protein size

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

Protein interface classification by evolutionary analysis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

A survey of available tools and web servers for analysis of protein-protein interactions and interfaces

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

Inference of macromolecular assemblies from crystalline state

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

Physicochemical descriptors to discriminate protein-protein interactions in permanent and transient complexes selected by means of machine learning algorithms

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

NOXclass: prediction of protein-protein interaction types

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

The atomic structure of protein-protein recognition sites

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

Protein-protein crystal-packing contacts

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

Analysis of protein-protein interaction sites using surface patches

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

Binding affinity prediction for protein-ligand complexes based on β contacts and B factor.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

Beta atomic contacts: identifying critical specific contacts in protein binding interfaces.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

Propensity vectors of low-ASA residue pairs in the distinction of protein interactions.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

Comparative assessment of scoring functions on a diverse test set.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

DiMoVo: a Voronoi tessellation-based method for discriminating crystallographic and biological protein-protein interactions.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

Prediction of protein B-factor profiles.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

A dissection of specific and non-specific protein-protein interfaces

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

Dissecting subunit interfaces in homodimeric proteins

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

Conservation helps to identify biologically relevant crystal contacts

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

Discriminating between homodimeric and monomeric proteins in the crystalline state

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

PQS: a protein quaternary structure file server

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

Analysis of temperature factor distribution in high-resolution protein structures

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

Regulation of product chain length by isoprenyl diphosphate synthases

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290652

Flexibility analysis of enzyme active sites by crystallographic temperature factors

26 September 2018

1 reference

12 December 2020

Atomic contact vectors in protein‐protein recognition

1 reference

12 December 2020

Protein-protein interaction at crystal contacts

1 reference

12 December 2020

Specific versus non-specific contacts in protein crystals

1 reference

12 December 2020

10.1186/1471-2105-15-S16-S3

Identifiers

DOI

1 reference

8 August 2017

DBLP publication ID

journals/bmcbi/LiuLL14

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

8 August 2017

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