(Q35541156)

8 August 2017

title

RNA-Rocket: an RNA-Seq analysis resource for infectious disease research (English)

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8 August 2017

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Andrew S Warren

1

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Omar S. Harb

Omar Harb

7

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Daniel Lawson

Daniel Lawson

9

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Leslie Birgit Vosshall

Leslie B Vosshall

15

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Michael McClelland

Michael McClelland

12

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Cristina Aurrecoechea

2

Cristina Aurrecoechea

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8 August 2017

5

Scott Emrich

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Gloria I Giraldo-Calderón

8 August 2017

6

Gloria I Giraldo-Calderón

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8 August 2017

Brian Brunk

3

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8 August 2017

Prerak Desai

4

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8 August 2017

Deborah Hix

8

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8 August 2017

Dustin Machi

10

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8 August 2017

Chunhong Mao

11

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8 August 2017

Eric Nordberg

13

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8 August 2017

Maulik Shukla

14

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8 August 2017

Alice R Wattam

16

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8 August 2017

Rebecca Will

17

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8 August 2017

Hyun Seung Yoo

18

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8 August 2017

Bruno Sobral

19

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8 August 2017

language of work or name

English

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publication date

7 January 2015

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8 August 2017

number of pages

3

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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8 August 2017

volume

31

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8 August 2017

issue

9

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8 August 2017

page(s)

1496-1498

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EuPathDB: the eukaryotic pathogen database

8 August 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410666

The UCSC genome browser and associated tools

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410666

Fast gapped-read alignment with Bowtie 2

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410666

Summarizing and correcting the GC content bias in high-throughput sequencing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410666

VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410666

SAMStat: monitoring biases in next generation sequencing data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410666

The European Nucleotide Archive

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410666

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410666

The Sequence Alignment/Map format and SAMtools

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410666

RNA-Seq: a revolutionary tool for transcriptomics

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410666

Model-based analysis of ChIP-Seq (MACS)

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410666

Galaxy: a platform for interactive large-scale genome analysis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410666

Trimmomatic: a flexible trimmer for Illumina sequence data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410666

PATRIC, the bacterial bioinformatics database and analysis resource

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410666

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410666

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410666

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410666

BEDTools: a flexible suite of utilities for comparing genomic features

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410666

Mapping short DNA sequencing reads and calling variants using mapping quality scores

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410666

10.1093/BIOINFORMATICS/BTV002

26 September 2018

Identifiers

DOI

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journals/bioinformatics/WarrenABDEGHHLM15

8 August 2017

DBLP publication ID

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DBLP Dataset 2021-01-02

28 January 2021

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8 August 2017

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