(Q35552918)

8 August 2017

title

Extensive strain-level copy-number variation across human gut microbiome species (English)

1 reference

8 August 2017

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3

Elhanan Borenstein

1 reference

8 August 2017

Sharon Greenblum

1

1 reference

8 August 2017

Rogan Carr

series ordinal

2

1 reference

8 August 2017

language of work or name

English

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publication date

29 January 2015

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8 August 2017

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8 August 2017

volume

160

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8 August 2017

issue

4

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8 August 2017

page(s)

583-594

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The prevalence of species and strains in the human microbiome: a resource for experimental efforts

8 August 2017

cites work

1 reference

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12 July 2018

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High-fat diet alters gut microbiota physiology in mice

12 July 2018

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12 July 2018

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Pro-inflammatory flagellin proteins of prevalent motile commensal bacteria are variably abundant in the intestinal microbiome of elderly humans

12 July 2018

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Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules

12 July 2018

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12 July 2018

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Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome

12 July 2018

1 reference

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Genomic variation landscape of the human gut microbiome

12 July 2018

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A metagenome-wide association study of gut microbiota in type 2 diabetes

12 July 2018

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Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization

12 July 2018

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12 July 2018

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Repeated, selection-driven genome reduction of accessory genes in experimental populations

12 July 2018

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Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans

12 July 2018

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12 July 2018

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Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins

12 July 2018

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Strain-resolved community genomic analysis of gut microbial colonization in a premature infant

12 July 2018

1 reference

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A human gut microbial gene catalogue established by metagenomic sequencing

12 July 2018

1 reference

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Metabolic syndrome and altered gut microbiota in mice lacking Toll-like receptor 5

12 July 2018

1 reference

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Ribosomal RNA diversity predicts genome diversity in gut bacteria and their relatives

12 July 2018

1 reference

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Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults

12 July 2018

1 reference

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Phenotypic and genomic diversity of Lactobacillus plantarum strains isolated from various environmental niches

12 July 2018

1 reference

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The Sequence Alignment/Map format and SAMtools

12 July 2018

1 reference

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Comparative genomics of Enterococcus faecalis from healthy Norwegian infants

12 July 2018

1 reference

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A core gut microbiome in obese and lean twins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507803

Twitching motility is essential for virulence in Dichelobacter nodosus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507803

Comparative genomics of Bordetella pertussis reveals progressive gene loss in Finnish strains

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507803

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases

12 July 2018

1 reference

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Mutations in HlyD, part of the type 1 translocator for hemolysin secretion, affect the folding of the secreted toxin

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507803

Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant Staphylococcus aureus Strain and a Biofilm-Producing Methicillin-Resistant Staphylococcus epidermidis Strain

12 July 2018

1 reference

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Increased oxidative stress in obesity and its impact on metabolic syndrome

12 July 2018

1 reference

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A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains

12 July 2018

1 reference

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Cloning and characterization of the region III flagellar operons of the four Shigella subgroups: genetic defects that cause loss of flagella of Shigella boydii and Shigella sonnei

12 July 2018

1 reference

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Role of gene duplications in the adaptation of Salmonella typhimurium to growth on limiting carbon sources

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507803

Genome resolved analysis of a premature infant gut microbial community reveals a Varibaculum cambriense genome and a shift towards fermentation-based metabolism during the third week of life

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507803

Population genomics of early events in the ecological differentiation of bacteria.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507803

Ecology drives a global network of gene exchange connecting the human microbiome.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507803

Coenzyme Q10 supplementation lowers hepatic oxidative stress and inflammation associated with diet-induced obesity in mice.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507803

Gene duplication and biased functional retention of paralogs in bacterial genomes.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507803

Comparison study of plasma coenzyme Q10 levels in healthy subjects supplemented with ubiquinol versus ubiquinone

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25640238

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Flagellate and non-flagellate Proteus mirabilis in the development of experimental urinary tract infection

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25640238

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CELL.2014.12.038

1 reference

8 August 2017

1 reference

8 August 2017

1 reference