(Q35557717)

8 August 2017

title

Substitution rate variation at human CpG sites correlates with non-CpG divergence, methylation level and GC content (English)

1 reference

8 August 2017

2

Hans Ellegren

1 reference

8 August 2017

Carina F Mugal

1

1 reference

8 August 2017

publication date

22 June 2011

1 reference

8 August 2017

1 reference

8 August 2017

volume

12

1 reference

8 August 2017

issue

6

1 reference

8 August 2017

page(s)

R58

1 reference

Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes

8 August 2017

cites work

1 reference

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Human mutation rate associated with DNA replication timing

12 July 2018

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Cryptic variation in the human mutation rate

12 July 2018

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Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites.

12 July 2018

1 reference

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Effect of the assignment of ancestral CpG state on the estimation of nucleotide substitution rates in mammals

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Genome-scale DNA methylation maps of pluripotent and differentiated cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Global mapping of DNA methylation in mouse promoters reveals epigenetic reprogramming of pluripotency genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

The impact of recombination on nucleotide substitutions in the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Mutations of different molecular origins exhibit contrasting patterns of regional substitution rate variation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Human-macaque comparisons illuminate variation in neutral substitution rates

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

High-resolution mapping and characterization of open chromatin across the genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Genome-wide, high-resolution DNA methylation profiling using bisulfite-mediated cytosine conversion

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

CpG island mapping by epigenome prediction

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Chromatin structure and evolution in the human genome.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

PAML 4: phylogenetic analysis by maximum likelihood

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Probe selection and expression index computation of Affymetrix Exon Arrays

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

DNA methylation profiling of human chromosomes 6, 20 and 22

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Heterogeneous genomic molecular clocks in primates

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Initial sequence of the chimpanzee genome and comparison with the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

The scale of mutational variation in the murid genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

EUKARYOTIC CYTOSINE METHYLTRANSFERASES

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Transcription-coupled repair: a complex affair

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Homology-dependent methylation in primate repetitive DNA.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Conserved non-genic sequences - an unexpected feature of mammalian genomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

CpG mutation rates in the human genome are highly dependent on local GC content

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Chromatin architecture of the human genome: gene-rich domains are enriched in open chromatin fibers

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

The UCSC Table Browser data retrieval tool

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

12 July 2018

Male-driven evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Deterministic mutation rate variation in the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

A high-resolution recombination map of the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Mechanisms of transcription-coupled DNA repair

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Transcription-induced mutations: increase in C to T mutations in the nontranscribed strand during transcription in Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

DNA methylation and mutation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

5-Methylcytosine in eukaryotic DNA.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

CpG islands in vertebrate genomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

The expected equilibrium of the CpG dinucleotide in vertebrate genomes under a mutation model

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Transcription-repair coupling determines the strandedness of ultraviolet mutagenesis in Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Transcription-associated mutational asymmetry in mammalian evolution

12 July 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-6-R58

Substantial regional variation in substitution rates in the human genome: importance of GC content, gene density, and telomere-specific effects.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-6-R58

5-Methylcytosine as an Endogenous Mutagen in the Human LDL Receptor and p53 Genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-6-R58

Characteristics, causes and evolutionary consequences of male-biased mutation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-6-R58

Alu element mutation spectra: molecular clocks and the effect of DNA methylation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-6-R58

Transcription-induced mutational strand bias and its effect on substitution rates in human genes

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Strong and weak male mutation bias at different sites in the primate genomes: insights from the human-chimpanzee comparison.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218846

Variations in substitution rate in human and mouse genomes

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21696599

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Assessing the conservation of mammalian gene expression using high-density exon arrays

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21696599

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2011-12-6-R58

1 reference

8 August 2017

1 reference

8 August 2017

1 reference