(Q35560591)

8 August 2017

title

Quantitative profiling of peptides from RNAs classified as noncoding (English)

1 reference

8 August 2017

Dominic Winter

4

0 references

Gabriel Kreiman

object named as

Gabriel Kreiman

10

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Martin Hemberg

2

object named as

Martin Hemberg

1 reference

8 August 2017

author name string

Sudhakaran Prabakaran

1

1 reference

8 August 2017

Ruchi Chauhan

3

1 reference

8 August 2017

Ry Y Tweedie-Cullen

5

1 reference

8 August 2017

Christian Dittrich

6

1 reference

8 August 2017

Elizabeth Hong

7

1 reference

8 August 2017

Jeremy Gunawardena

8

1 reference

8 August 2017

Hanno Steen

9

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8 August 2017

Judith A Steen

11

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8 August 2017

language of work or name

English

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publication date

18 November 2014

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8 August 2017

published in

Nature Communications

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8 August 2017

volume

5

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8 August 2017

page(s)

5429

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Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.

8 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Toddler: an embryonic signal that promotes cell movement via Apelin receptors

27 July 2018

1 reference

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Conserved regulation of cardiac calcium uptake by peptides encoded in small open reading frames

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

A non-parametric cutout index for robust evaluation of identified proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Peptidomic discovery of short open reading frame-encoded peptides in human cells.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Landscape of transcription in human cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Proto-genes and de novo gene birth

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Integrated genome analysis suggests that most conserved non-coding sequences are regulatory factor binding sites

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Naming 'junk': human non-protein coding RNA (ncRNA) gene nomenclature

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Biochemical principles of small RNA pathways

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Evolution and functions of long noncoding RNAs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

What do natural antisense transcripts regulate?

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Differentiating protein-coding and noncoding RNA: challenges and ambiguities

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Robust prediction of the MASCOT score for an improved quality assessment in mass spectrometric proteomics

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Robust and sensitive iTRAQ quantification on an LTQ Orbitrap mass spectrometer

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Genome annotation past, present, and future: how to define an ORF at each locus

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Co-regulation proteomics reveals substrates and mechanisms of APC/C-dependent degradation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Divergent transcription: a driving force for new gene origination?

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

A map of the cis-regulatory sequences in the mouse genome

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Widespread transcription at neuronal activity-regulated enhancers

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Computational protein profile similarity screening for quantitative mass spectrometry experiments

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Divergent transcription from active promoters

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Diversity of translation start sites may define increased complexity of the human short ORFeome

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Aligning multiple genomic sequences with the threaded blockset aligner

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Large-scale transcriptional activity in chromosomes 21 and 22

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416701

Optimization of cell lysis and protein digestion protocols for the analysis of HeLa S3 cells by LC-MS/MS

26 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCOMMS6429

21 January 2018

Identifiers

DOI

10.1038/NCOMMS6429

1 reference

8 August 2017

0 references

1 reference

8 August 2017

1 reference