(Q35576327)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25080971%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

title

Integration of proteomic and transcriptomic profiles identifies a novel PDGF-MYC network in human smooth muscle cells (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25080971%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25080971%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

author name string

Aruna Ramachandran

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25080971%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

Sungyong You

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25080971%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

HyoBin Jeong

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25080971%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

Samantha Morley

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25080971%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

Michelle D Mulone

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25080971%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

Tanya Logvinenko

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25080971%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

Jayoung Kim

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25080971%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

Daehee Hwang

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25080971%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

Michael R Freeman

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25080971%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

Rosalyn M Adam

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25080971%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

publication date

1 August 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25080971%20AND%20SRC:MED&resulttype=core&format=json

Cell Communication and Signaling

11 March 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25080971%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

volume

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25080971%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

page(s)

44

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25080971%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

11 March 2020

copyright license

start time

1 August 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Mutual interaction between YAP and c-Myc is critical for carcinogenesis in liver cancer

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Mechanotransduction and YAP-dependent matrix remodelling is required for the generation and maintenance of cancer-associated fibroblasts.

27 July 2018

1 reference

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Inhibition of Myc family proteins eradicates KRas-driven lung cancer in mice

27 July 2018

1 reference

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Evaluation of silk biomaterials in combination with extracellular matrix coatings for bladder tissue engineering with primary and pluripotent cells

27 July 2018

1 reference

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Platelet-derived growth factor signaling in mesenchymal cells

27 July 2018

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The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013

27 July 2018

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Functional proteomic analysis of long-term growth factor stimulation and receptor tyrosine kinase coactivation in Swiss 3T3 fibroblasts

27 July 2018

1 reference

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In vivo regulation of the heme oxygenase-1 gene in humanized transgenic mice

27 July 2018

1 reference

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FosB regulates stretch-induced expression of extracellular matrix proteins in smooth muscle

27 July 2018

1 reference

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BET bromodomain inhibition as a therapeutic strategy to target c-Myc

27 July 2018

1 reference

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Proteomic analysis of palmitoylated platelet proteins

27 July 2018

1 reference

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Global quantification of mammalian gene expression control

27 July 2018

1 reference

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Quantitative proteomics identifies a beta-catenin network as an element of the signaling response to Frizzled-8 protein-related antiproliferative factor

27 July 2018

1 reference

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DMF inhibits PDGF-BB induced airway smooth muscle cell proliferation through induction of heme-oxygenase-1.

27 July 2018

1 reference

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An Akt- and Fra-1-dependent pathway mediates platelet-derived growth factor-induced expression of thrombomodulin, a novel regulator of smooth muscle cell migration

27 July 2018

1 reference

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Quantitative proteomics analysis reveals molecular networks regulated by epidermal growth factor receptor level in head and neck cancer.

27 July 2018

1 reference

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Time-dependent c-Myc transactomes mapped by Array-based nuclear run-on reveal transcriptional modules in human B cells

27 July 2018

1 reference

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Integrative genomics identifies DSCR1 (RCAN1) as a novel NFAT-dependent mediator of phenotypic modulation in vascular smooth muscle cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Proteome scale characterization of human S-acylated proteins in lipid raft-enriched and non-raft membranes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

27 July 2018

1 reference

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Formins in cell signaling

27 July 2018

1 reference

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Role of platelet-derived growth factors in physiology and medicine

27 July 2018

1 reference

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Simultaneous inference in general parametric models

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Transcription factor and microRNA motif discovery: the Amadeus platform and a compendium of metazoan target sets

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

CCN1 knockdown suppresses neointimal hyperplasia in a rat artery balloon injury model

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Proteomics analysis identifies molecular targets related to diabetes mellitus-associated bladder dysfunction

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

PDGF-induced human airway smooth muscle cell proliferation requires STAT3 and the small GTPase Rac1.

27 July 2018

1 reference

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Novel roles of formin mDia2 in lamellipodia and filopodia formation in motile cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling

27 July 2018

1 reference

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Cholesterol sensitivity of endogenous and myristoylated Akt.

27 July 2018

1 reference

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bZIPDB: a database of regulatory information for human bZIP transcription factors

27 July 2018

1 reference

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EGF and PDGF receptor tyrosine kinases as therapeutic targets for chronic lung diseases

27 July 2018

1 reference

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BioGRID: a general repository for interaction datasets

27 July 2018

1 reference

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A data integration methodology for systems biology

27 July 2018

1 reference

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Identification of growth factor-regulated proteins using 2D electrophoresis and mass spectrometry

27 July 2018

1 reference

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

27 July 2018

1 reference

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The Rho family GTPase Rif induces filopodia through mDia2.

27 July 2018

1 reference

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TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies

27 July 2018

1 reference

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Decreased tumorigenicity of c-Myc-transformed fibroblasts expressing active USF2.

27 July 2018

1 reference

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Mechanical stretch is a highly selective regulator of gene expression in human bladder smooth muscle cells

27 July 2018

1 reference

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Bioconductor: open software development for computational biology and bioinformatics

27 July 2018

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Upstream stimulatory factors, USF1 and USF2, bind to the human haem oxygenase-1 proximal promoter in vivo and regulate its transcription

27 July 2018

1 reference

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Recruitment of Pyk2 and Cbl to lipid rafts mediates signals important for actin reorganization in growing neurites

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Human protein reference database as a discovery resource for proteomics

27 July 2018

1 reference

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Low molecular weight inhibitors of Myc-Max interaction and function

27 July 2018

1 reference

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A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

27 July 2018

1 reference

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STRING: a database of predicted functional associations between proteins

27 July 2018

1 reference

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Gene ontology: tool for the unification of biology

27 July 2018

1 reference

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Acute increase in blood flow to the rat bladder subsequent to partial bladder outlet obstruction

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

AP-1 mediates stretch-induced expression of HB-EGF in bladder smooth muscle cells.

27 July 2018

1 reference

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Functional proteomics of signal transduction by membrane receptors

27 July 2018

1 reference

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Functional proteomics analysis of signal transduction pathways of the platelet-derived growth factor beta receptor

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

KEGG: Kyoto Encyclopedia of Genes and Genomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Antiproliferative properties of the USF family of helix-loop-helix transcription factors

27 July 2018

1 reference

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BET bromodomain inhibition of MYC-amplified medulloblastoma.

27 July 2018

1 reference

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A systems approach for decoding mitochondrial retrograde signaling pathways.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Inhibiting CXCL12 blocks fibrocyte migration and differentiation and attenuates bronchiolitis obliterans in a murine heterotopic tracheal transplant model

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Platelet-derived growth factor-BB mediates cell migration through induction of activating transcription factor 4 and tenascin-C.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

PDGF-induced migration of vascular smooth muscle cells is inhibited by heme oxygenase-1 via VEGFR2 upregulation and subsequent assembly of inactive VEGFR2/PDGFRβ heterodimers.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Does diabetes mellitus-induced bladder remodeling affect lower urinary tract function? ICI-RS 2011.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Yap1 protein regulates vascular smooth muscle cell phenotypic switch by interaction with myocardin

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Platelet-derived growth factor and transforming growth factor-beta modulate the expression of matrix metalloproteinases and migratory function of human airway smooth muscle cells.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Sp1-dependent activation of KLF4 is required for PDGF-BB-induced phenotypic modulation of smooth muscle

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Mechanical strain activates a program of genes functionally involved in paracrine signaling of angiogenesis

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Stretch-induced activation of the transcription factor activator protein-1 controls monocyte chemoattractant protein-1 expression during arteriogenesis.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Role of lipid rafts in agrin-elicited acetylcholine receptor clustering

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Targeted deletion of PTEN in smooth muscle cells results in vascular remodeling and recruitment of progenitor cells through induction of stromal cell-derived factor-1alpha.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

ORegAnno: an open-access community-driven resource for regulatory annotation

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Transcription factor CHF1/Hey2 regulates the global transcriptional response to platelet-derived growth factor in vascular smooth muscle cells.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Diaphanous 1 and 2 regulate smooth muscle cell differentiation by activating the myocardin-related transcription factors.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Signaling through PI3K/Akt mediates stretch and PDGF-BB-dependent DNA synthesis in bladder smooth muscle cells

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

CCAAT/enhancer-binding protein and activator protein-1 transcription factors regulate the expression of interleukin-8 through the mitogen-activated protein kinase pathways in response to mechanical stretch of human airway smooth muscle cells.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Platelet derived growth factor-BB is a potent mitogen for rat ureteral and human bladder smooth muscle cells: dependence on lipid rafts for cell signaling

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

F-actin dynamics control segregation of the TCR signaling cascade to clustered lipid rafts.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Targeted expression of heme oxygenase-1 prevents the pulmonary inflammatory and vascular responses to hypoxia

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

A quantitative proteomic analysis of growth factor-induced compositional changes in lipid rafts of human smooth muscle cells

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

mDia2 regulates actin and focal adhesion dynamics and organization in the lamella for efficient epithelial cell migration

15 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Yes-Associated Protein (YAP) is a critical mediator of c-Jun-dependent apoptosis

15 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422302

Localization of platelet-derived growth factor-stimulated phosphorylation cascade to caveolae

15 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25080971

12 December 2020

inferred from PubMed ID database lookup

Cyclic stretch activates p38 SAPK2-, ErbB2-, and AT1-dependent signaling in bladder smooth muscle cells

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25080971

12 December 2020

inferred from PubMed ID database lookup

Cyr61 and CTGF are molecular markers of bladder wall remodeling after outlet obstruction

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25080971

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

Dimensions Publication ID

1 reference

https://scigraph.springernature.com/pub.10.1186/s12964-014-0044-z

9 September 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25080971%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

PubMed publication ID

25080971

1 reference