(Q35579280)

9 August 2017

The Use of Bioinformatics for Studying HIV Evolutionary and Epidemiological History in South America (English)

1 reference

9 August 2017

1 reference

1

Gonzalo Bello

1 reference

9 August 2017

Marcelo A Soares

2

1 reference

PubMed ID

22162803

9 August 2017

Carlos G Schrago

series ordinal

3

1 reference

9 August 2017

15 November 2011

1 reference

AIDS Research and Treatment

9 August 2017

1 reference

9 August 2017

2011

1 reference

9 August 2017

154945

1 reference

Creative Commons Attribution 3.0 Unported

9 August 2017

start time

1 January 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

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12 July 2018

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12 July 2018

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The HIV-1 subtype C epidemic in South America is linked to the United Kingdom

12 July 2018

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In-depth analysis of the origins of HIV type 1 subtype C in South America

12 July 2018

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Bayesian phylogeography finds its roots

12 July 2018

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12 July 2018

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12 July 2018

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Tracing the HIV-1 subtype B mobility in Europe: a phylogeographic approach

12 July 2018

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Close phylogenetic relationship between Angolan and Romanian HIV-1 subtype F1 isolates

12 July 2018

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Bayesian inference of population size history from multiple loci

12 July 2018

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Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960

12 July 2018

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The HIV type 1 epidemic in Bulgaria involves multiple subtypes and is sustained by continuous viral inflow from West and East European countries

12 July 2018

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Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics

12 July 2018

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High-resolution molecular epidemiology and evolutionary history of HIV-1 subtypes in Albania

12 July 2018

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12 July 2018

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Autochthonous horizontal transmission of a CRF02_AG strain revealed by a human immunodeficiency virus type 1 diversity survey in a small city in inner state of Rio de Janeiro, Southeast Brazil.

12 July 2018

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The emergence of HIV/AIDS in the Americas and beyond

12 July 2018

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Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty

12 July 2018

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HIV evolutionary dynamics within and among hosts

12 July 2018

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Extremely rapid spread of human immunodeficiency virus type 1 BF recombinants in Argentina

12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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Phylogenetic analysis of Brazilian HIV type 1 subtype D strains: tracing the origin of this subtype in Brazil

12 July 2018

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Identification of two HIV type 1 circulating recombinant forms in Brazil

12 July 2018

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Molecular epidemiology of HIV-1 variants in the global AIDS pandemic: an update.

12 July 2018

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Molecular clocks: four decades of evolution

12 July 2018

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Different epidemic potentials of the HIV-1B and C subtypes

12 July 2018

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Genetic analysis reveals the complex structure of HIV-1 transmission within defined risk groups

12 July 2018

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Comparative population dynamics of HIV-1 subtypes B and C: subtype-specific differences in patterns of epidemic growth.

12 July 2018

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Bayesian coalescent inference of past population dynamics from molecular sequences

12 July 2018

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RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees

12 July 2018

1 reference

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Divergence dates for Malagasy lemurs estimated from multiple gene loci: geological and evolutionary context

12 July 2018

1 reference

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The phylogeography of human viruses

12 July 2018

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The causes and consequences of HIV evolution

12 July 2018

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

12 July 2018

1 reference

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MrBayes 3: Bayesian phylogenetic inference under mixed models

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226295

Tracing the origin and history of the HIV-2 epidemic

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226295

U.S. Human immunodeficiency virus type 1 epidemic: date of origin, population history, and characterization of early strains

12 July 2018

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The modern molecular clock

12 July 2018

1 reference

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Potential applications and pitfalls of Bayesian inference of phylogeny

12 July 2018

1 reference

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Genetic algorithms and parallel processing in maximum-likelihood phylogeny inference

12 July 2018

1 reference

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Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226295

Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach

12 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226295

12 July 2018

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Bayesian inference of phylogeny and its impact on evolutionary biology

21 January 2018

1 reference

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Exploring the demographic history of DNA sequences using the generalized skyline plot

12 July 2018

1 reference

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Performance of a divergence time estimation method under a probabilistic model of rate evolution

12 July 2018

1 reference

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Estimation of primate speciation dates using local molecular clocks

12 July 2018

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An integrated framework for the inference of viral population history from reconstructed genealogies.

12 July 2018

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Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies

12 July 2018

1 reference

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Timing the ancestor of the HIV-1 pandemic strains

12 July 2018

1 reference

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AIDS as a zoonosis: scientific and public health implications

12 July 2018

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Estimating the rate of evolution of the rate of molecular evolution

12 July 2018

1 reference

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High frequency of the GWG (Pro Trp) envelope variant of HIV-1 in Southeast Brazil.

12 July 2018

1 reference

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Recombination in HIV: an important viral evolutionary strategy

12 July 2018

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Identification of human immunodeficiency virus type 1 envelope genes recombinant between subtypes B and F in two epidemiologically linked individuals from Brazil.

12 July 2018

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Sampling theory for neutral alleles in a varying environment.

12 July 2018

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V3 Region Polymorphisms in HIV-1 from Brazil: Prevalence of Subtype B Strains Divergent from North American/European Prototype and Detection of Subtype F

12 July 2018

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A cladistic measure of gene flow inferred from the phylogenies of alleles

12 July 2018

1 reference

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HIV-1 diversity in Brazil: genetic, biologic, and immunologic characterization of HIV-1 strains in three potential HIV vaccine evaluation sites. Brazilian Network for HIV Isolation and Characterization.

12 July 2018

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HIV-1 subtyping in Salvador, Bahia, Brazil: a city with African sociodemographic characteristics.

21 January 2018

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A specific subtype C of human immunodeficiency virus type 1 circulates in Brazil

21 January 2018

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HIV type 1 BF recombinant strains exhibit different pol gene mosaic patterns: descriptive analysis from 284 patients under treatment failure.

21 January 2018

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HIV type 1 genetic diversity surveillance among newly diagnosed individuals from 2003 to 2005 in Buenos Aires, Argentina.

21 January 2018

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Identification of a new HIV Type 1 circulating recombinant form (CRF38_BF1) in Uruguay

21 January 2018

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Diverse BF recombinants have spread widely since the introduction of HIV-1 into South America

21 January 2018

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Antiretroviral drug resistance and phylogenetic diversity of HIV-1 in Chile

21 January 2018

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Epidemiological and molecular characteristics of HIV-1 infection among female commercial sex workers, men who have sex with men and people living with AIDS in Paraguay

21 January 2018

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Identification of two new CRF_BF in Rio de Janeiro State, Brazil.

21 January 2018

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Identification of a new HIV type 1 BF intersubtype circulating recombinant form (CRF44_BF) in Chile.

21 January 2018

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Characterization of a new circulating recombinant form comprising HIV-1 subtypes C and B in southern Brazil.

21 January 2018

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Drug resistance testing provides evidence of the globalization of HIV type 1: a new circulating recombinant form.

21 January 2018

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Bayesian phylogenetic inference via Markov chain Monte Carlo methods.

21 January 2018

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GARD: a genetic algorithm for recombination detection

21 January 2018

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Increasing Prevalence of HIV‐1 Subtype A in Greece: Estimating Epidemic History and Origin

21 January 2018

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Measurably evolving populations

21 January 2018

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A Nonparametric Approach to Estimating Divergence Times in the Absence of Rate Constancy

21 January 2018

1 reference

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Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference

21 January 2018

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https://api.crossref.org/works/10.1155%2F2011%2F154945

The mid-depth method and HIV-1: a practical approach for testing hypotheses of viral epidemic history.

21 January 2018

1 reference

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Demographic history of HIV-1 subtypes B and F in Brazil

21 January 2018

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Description of the first full-length HIV type 1 subtype F1 strain in Argentina: implications for the origin and dispersion of this subtype in South America.

21 January 2018

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Origin and evolutionary history of HIV-1 subtype C in Brazil.

21 January 2018

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On the origin of HIV-1 subtype C in South America

21 January 2018

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Epidemiologic and evolutionary trends of HIV-1 CRF31_BC-related strains in southern Brazil.

21 January 2018

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Limitations of a molecular clock applied to considerations of the origin of HIV-1.

21 January 2018

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A viral sampling design for testing the molecular clock and for estimating evolutionary rates and divergence times.

21 January 2018

1 reference

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Short communication: Evidences of recent decline in the expansion rate of the HIV type 1 subtype C and CRF31_BC epidemics in southern Brazil.

21 January 2018

1 reference

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Population dynamics of HIV-1 subtype B in a cohort of men-having-sex-with-men in Rome, Italy.

21 January 2018

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https://api.crossref.org/works/10.1155%2F2011%2F154945

Molecular characteristics of HIV type 1 circulating in São Paulo, Brazil.

21 January 2018

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Analysis of HIV-1 BF pr/rt recombinant strains from Rio de Janeiro/Brazil reveals multiple unrelated mosaic structures.

21 January 2018

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Longitudinal analysis of HIV-1 BF1 recombinant strains in vertically infected children from Argentina reveals a decrease in CRF12_BF pol gene mosaic patterns and high diversity of BF unique recombinant forms

21 January 2018

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HIV type 1 pol gene diversity and antiretroviral drug resistance mutations in Santos, Brazil

21 January 2018

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Young pregnant women living with HIV/AIDS in Criciuma, Southern Brazil, are infected almost exclusively with HIV type 1 clade C.

21 January 2018

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A molecular study on the evolution of a subtype B variant frequently found in Brazil

21 January 2018

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HIV-1 nomenclature proposal.

26 September 2018

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Genetic heterogeneity of the V3 region of the HIV-1 envelope glycoprotein in Brazil. Brazilian Collaborative AIDS Research Group.

26 September 2018

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The origin of South American HIV-1 subtype C: lack of evidence for a Mozambican ancestry

26 September 2018

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Selective regimes and evolutionary rates of HIV-1 subtype B V3 variants in the Brazilian epidemic

21 January 2018

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On the origin of South America HIV-1 C epidemic

21 January 2018

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12 December 2020

Statistical phylogeography: methods of evaluating and minimizing inference errors

1 reference

12 December 2020

Increasing genetic distance to HIV-1 subtype B and F1 consensus sequences in the Brazilian epidemic: a challenge for vaccine strategies based on central immunogens?

1 reference

12 December 2020

Molecular Epidemiology of HIV Type 1 in Northern Brazil: Identification of Subtypes C and D and the Introduction of CRF02_AG in the Amazon Region of Brazil

1 reference

12 December 2020

Mother-to-child HIV type 1 transmission in Argentina: BF recombinants have predominated in infected children since the mid-1980s

1 reference

12 December 2020

Commentary: decline of HIV-2 prevalence in West Africa: good news or bad news?

1 reference

12 December 2020

Widespread circulation of a B/F intersubtype recombinant form among HIV-1-infected individuals in Buenos Aires, Argentina

1 reference

12 December 2020

Molecular epidemiology of HIV in Brazil: polymorphism of the antigenically distinct HIV-1 B subtype strains. The Hospital Evandro Chagas AIDS Clinical Research Group

1 reference

12 December 2020

HIV Type 1 Subtype C and CB Pol Recombinants Prevail at the Cities with the Highest AIDS Prevalence Rate in Brazil

1 reference

12 December 2020

Brazilian Network for HIV Drug Resistance Surveillance (HIV-BResNet): a survey of chronically infected individuals

1 reference

12 December 2020

Molecular Epidemiology of HIV Type 1 in Ecuador, Peru, Bolivia, Uruguay, and Argentina

1 reference

12 December 2020

Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning

1 reference

12 December 2020

Identifiers

DOI

10.1155/2011/154945

1 reference

9 August 2017

1 reference

9 August 2017

1 reference

PubMed ID

22162803