(Q35579872)

9 August 2017

title

Gene-expression novelty in allopolyploid cotton: a proteomic perspective (English)

1 reference

9 August 2017

5

Jonathan F Wendel

1 reference

9 August 2017

Guanjing Hu

1

1 reference

9 August 2017

Jin Koh

series ordinal

2

1 reference

9 August 2017

Mi-Jeong Yoo

series ordinal

3

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9 August 2017

Sixue Chen

series ordinal

4

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9 August 2017

language of work or name

English

0 references

publication date

2 March 2015

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9 August 2017

number of pages

14

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inferred from page(s)

published in

Genetics

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9 August 2017

volume

200

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9 August 2017

issue

1

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9 August 2017

page(s)

91-104

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Nonadditive gene expression in polyploids

9 August 2017

cites work

1 reference

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Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids

27 July 2018

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Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense

27 July 2018

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Genetic and epigenetic aspects of polyploid evolution in plants

27 July 2018

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Homoeolog expression bias and expression level dominance in allopolyploid cotton

27 July 2018

1 reference

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Deep sequencing reveals differences in the transcriptional landscapes of fibers from two cultivated species of cotton

27 July 2018

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Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton

27 July 2018

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Cotton fiber: a powerful single-cell model for cell wall and cellulose research

27 July 2018

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Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

27 July 2018

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27 July 2018

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Molecular mechanisms of fiber differential development between G. barbadense and G. hirsutum revealed by genetical genomics

27 July 2018

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Extensive chromosomal variation in a recently formed natural allopolyploid species, Tragopogon miscellus (Asteraceae).

27 July 2018

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Proteomic divergence in Arabidopsis autopolyploids and allopolyploids and their progenitors.

27 July 2018

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Genomically biased accumulation of seed storage proteins in allopolyploid cotton.

27 July 2018

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Ancestral polyploidy in seed plants and angiosperms

27 July 2018

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Wheat hybridization and polyploidization results in deregulation of small RNAs

27 July 2018

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Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss

27 July 2018

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Structure, expression differentiation and evolution of duplicated fiber developmental genes in Gossypium barbadense and G. hirsutum

27 July 2018

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agriGO: a GO analysis toolkit for the agricultural community

27 July 2018

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Homeolog loss and expression changes in natural populations of the recently and repeatedly formed allotetraploid Tragopogon mirus (Asteraceae)

27 July 2018

1 reference

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Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation.

27 July 2018

1 reference

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Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids

27 July 2018

1 reference

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The role of hybridization in plant speciation

27 July 2018

1 reference

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On the road to diploidization? Homoeolog loss in independently formed populations of the allopolyploid Tragopogon miscellus (Asteraceae)

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Genomic expression dominance in allopolyploids

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (gossypium)

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Genomic plasticity and the diversity of polyploid plants

27 July 2018

1 reference

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Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant

27 July 2018

1 reference

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Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution

27 July 2018

1 reference

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Evolution of rDNA in Nicotiana allopolyploids: a potential link between rDNA homogenization and epigenetics

27 July 2018

1 reference

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Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype

27 July 2018

1 reference

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Application of proteomics to ecology and population biology

27 July 2018

1 reference

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Differential regulation of gene products in newly synthesized Brassica napus allotetraploids is not related to protein function nor subcellular localization

27 July 2018

1 reference

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Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids

27 July 2018

1 reference

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Numerous and rapid nonstochastic modifications of gene products in newly synthesized Brassica napus allotetraploids

27 July 2018

1 reference

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Comparative study of three proteomic quantitative methods, DIGE, cICAT, and iTRAQ, using 2D gel- or LC-MALDI TOF/TOF.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

The advantages and disadvantages of being polyploid

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Genomewide nonadditive gene regulation in Arabidopsis allotetraploids

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

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27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Development of anonymous cDNA microarrays to study changes to the Senecio floral transcriptome during hybrid speciation.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Rapid and repeatable elimination of a parental genome-specific DNA repeat (pGc1R-1a) in newly synthesized wheat allopolyploids

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Cotton fiber growth in planta and in vitro. Models for plant cell elongation and cell wall biogenesis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Genome evolution in polyploids

27 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

27 July 2018

12 December 2020

Proteomics profiling of fiber development and domestication in upland cotton (Gossypium hirsutum L.).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Correlation of mRNA and protein abundance in the developing maize leaf

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Parental genome expression in synthetic wheats (Triticum turgidum sp. × T. tauschii sp.) revealed by two-dimensional electrophoresis of seedling proteins

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Prevalence of gene expression additivity in genetically stable wheat allohexaploids

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Polyploidy and its effect on evolutionary success: old questions revisited with new tools

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Homoeolog expression bias and expression level dominance in allopolyploids.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Genomic expression dominance in the natural allopolyploid Coffea arabica is massively affected by growth temperature.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

cis- and trans-Regulation of miR163 and target genes confers natural variation of secondary metabolites in two Arabidopsis species and their allopolyploids.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Homoeologous shuffling and chromosome compensation maintain genome balance in resynthesized allopolyploid Brassica napus

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Transcriptomic changes following recent natural hybridization and allopolyploidy in the salt marsh species Spartina x townsendii and Spartina anglica (Poaceae).

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

The first meiosis of resynthesized Brassica napus, a genome blender.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Homoeologous nonreciprocal recombination in polyploid cotton.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Phenotypic, genetic and genomic consequences of natural and synthetic polyploidization of Nicotiana attenuata and Nicotiana obtusifolia

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Gene loss and silencing in Tragopogon miscellus (Asteraceae): comparison of natural and synthetic allotetraploids.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Evolutionary genetics of genome merger and doubling in plants

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Quantitative proteomics in plants: choices in abundance.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Pvclust: an R package for assessing the uncertainty in hierarchical clustering.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae).

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Tackling the plant proteome: practical approaches, hurdles and experimental tools.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Nonadditive changes in genome size during allopolyploidization in the wheat (aegilops-triticum) group

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allotetraploids

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Comparative development of fiber in wild and cultivated cotton

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423384

Homoeologous gene silencing in hexaploid wheat

26 September 2018

1 reference

12 December 2020

Genome-wide gene expression changes in genetically stable synthetic and natural wheat allohexaploids

1 reference

12 December 2020

Comparative proteomics of the recently and recurrently formed natural allopolyploid Tragopogon mirus (Asteraceae) and its parents

1 reference

12 December 2020

Tissue-specific silencing of homoeologs in natural populations of the recent allopolyploid Tragopogon mirus

1 reference

12 December 2020

Preferential elimination of repeated DNA sequences from the paternal, Nicotiana tomentosiformis genome donor of a synthetic, allotetraploid tobacco

1 reference

12 December 2020

Proteome analysis of diploid, tetraploid and hexaploid wheat: towards understanding genome interaction in protein expression

1 reference

12 December 2020

10.1534/GENETICS.115.174367

Identifiers

DOI

1 reference

9 August 2017

1 reference

9 August 2017

1 reference