(Q35581571)

9 August 2017

title

Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania (English)

1 reference

9 August 2017

author

Christiane Hertz-Fowler

17

Christiane Hertz-Fowler

0 references

Matthew Berriman

15

Matthew Berriman

1 reference

9 August 2017

12

Mandy Sanders

0 references

Thomas D Otto

11

Thomas D Otto

0 references

Nicholas J Dickens

Nicholas J Dickens

3

0 references

Paul A Bates

Paul A Bates

5

0 references

Jeremy C. Mottram

Jeremy C Mottram

18

0 references

Jonathan Wilkes

Jon Wilkes

4

0 references

Hideo Imamura

Hideo Imamura

10

0 references

Pawel Herzyk

9

Pawel Herzyk

1 reference

9 August 2017

Daniel P Depledge

6

0 references

author name string

Matthew B Rogers

1

1 reference

9 August 2017

James D Hilley

2

1 reference

9 August 2017

David Harris

7

1 reference

9 August 2017

Yerim Her

8

1 reference

9 August 2017

Mandy Sanders

12

1 reference

9 August 2017

Kathy Seeger

13

1 reference

9 August 2017

Jean-Claude Dujardin

14

1 reference

9 August 2017

Deborah F Smith

16

1 reference

9 August 2017

language of work or name

1 reference

28 October 2011

1 reference

9 August 2017

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9 August 2017

volume

21

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9 August 2017

issue

12

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9 August 2017

page(s)

2129-2142

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Whole genome sequencing of multiple Leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance

9 August 2017

cites work

1 reference

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27 July 2018

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27 July 2018

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Inference of population structure of Leishmania donovani strains isolated from different Ethiopian visceral leishmaniasis endemic areas

27 July 2018

1 reference

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Aneuploidy confers quantitative proteome changes and phenotypic variation in budding yeast

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Leishmania-specific surface antigens show sub-genus sequence variation and immune recognition

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Identification of aneuploidy-tolerating mutations

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Genomics. Genome project standards in a new era of sequencing

27 July 2018

1 reference

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Leishmania GP63 alters host signaling through cleavage-activated protein tyrosine phosphatases.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

The evolution of amastin surface glycoproteins in trypanosomatid parasites

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Comparative expression profiling of Leishmania: modulation in gene expression between species and in different host genetic backgrounds

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

The Sequence Alignment/Map format and SAMtools

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

ABACAS: algorithm-based automatic contiguation of assembled sequences

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Extreme inbreeding in Leishmania braziliensis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Demonstration of genetic exchange during cyclical development of Leishmania in the sand fly vector

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Gene expression modulation is associated with gene amplification, supernumerary chromosomes and chromosome loss in antimony-resistant Leishmania infantum.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

The Leishmania surface protease GP63 cleaves multiple intracellular proteins and actively participates in p38 mitogen-activated protein kinase inactivation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

The promastigote surface antigen gene family of the Leishmania parasite: differential evolution by positive selection and recombination

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Modulation of gene expression in drug resistant Leishmania is associated with gene amplification, gene deletion and chromosome aneuploidy.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Post-transcriptional regulation of gene expression in trypanosomes and leishmanias

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Comparative genomics: from genotype to disease phenotype in the leishmaniases

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Comparative genomic analysis of three Leishmania species that cause diverse human disease

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Evolutionary and geographical history of the Leishmania donovani complex with a revision of current taxonomy

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Evolution of tubulin gene arrays in Trypanosomatid parasites: genomic restructuring in Leishmania.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

PFPI-like genes are expressed in Leishmania major but are pseudogenes in other Leishmania species

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Advances in leishmaniasis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

The genome of the kinetoplastid parasite, Leishmania major

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

The Genome of the African Trypanosome Trypanosoma brucei

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Duplication and divergence: the evolution of new genes and old ideas

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

SSAHA: a fast search method for large DNA databases

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Immunization with a recombinant stage-regulated surface protein from Leishmania donovani induces protection against visceral leishmaniasis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Leishmania mexicana mutants lacking glycosylphosphatidylinositol (GPI):protein transamidase provide insights into the biosynthesis and functions of GPI-anchored proteins.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Conserved linkage groups associated with large-scale chromosomal rearrangements between Old World and New World Leishmania genomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

The Leishmania genome comprises 36 chromosomes conserved across widely divergent human pathogenic species

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Plasticity in chromosome number and testing of essential genes in Leishmania by targeting

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Dosage sensitivity shapes the evolution of copy-number varied regions.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Aneuploidy underlies rapid adaptive evolution of yeast cells deprived of a conserved cytokinesis motor

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Mapping short DNA sequencing reads and calling variants using mapping quality scores

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

A genomic-based approach combining in vivo selection in mice to identify a novel virulence gene in Leishmania

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Protein turnover and differentiation in Leishmania.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Ploidy changes associated with disruption of two adjacent genes on Leishmania major chromosome 1.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

The origins of genome complexity

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Transcription of Leishmania major Friedlin chromosome 1 initiates in both directions within a single region.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

The CRK3 protein kinase is essential for cell cycle progression of Leishmania mexicana.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Molecular characterization of a hyperinducible, surface membrane-anchored, class I nuclease of a trypanosomatid parasite

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

The size difference between leishmania major friedlin chromosome one homologues is localized to sub-telomeric repeats at one chromosomal end.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227102

Screening Leishmania donovani-specific genes required for visceral infection

26 September 2018

1 reference

12 December 2020

The Relative Contribution of IL-4 Receptor Signaling and IL-10 to Susceptibility toLeishmania major

1 reference

12 December 2020

Regulation of Leishmania populations within the host. I. the variable course of Leishmania donovani infections in mice

1 reference

12 December 2020

FISH analysis reveals aneuploidy and continual generation of chromosomal mosaicism in Leishmania major

1 reference

12 December 2020

Exposing the fitness contribution of duplicated genes

1 reference

12 December 2020

Identifiers

DOI

10.1101/GR.122945.111

1 reference

9 August 2017

1 reference

9 August 2017

1 reference