(Q35590752)

9 August 2017

1 reference

title

Large scale simulation of protein mechanics and function (English)

1 reference

9 August 2017

1

1 reference

9 August 2017

8

Klaus Schulten

1 reference

9 August 2017

James C Phillips

6

1 reference

ORCID Public Data File 2021

Aleksij Aksimentiev

series ordinal

2

object named as

Aleksij Aksimentiev

1 reference

9 August 2017

5

Barry Isralewitz

1 reference

9 August 2017

Ilya Balabin

3

1 reference

9 August 2017

Mu Gao

series ordinal

4

1 reference

9 August 2017

Fangqiang Zhu

series ordinal

7

1 reference

9 August 2017

publication date

1 January 2003

1 reference

Advances in Protein Chemistry

9 August 2017

published in

1 reference

9 August 2017

volume

66

1 reference

9 August 2017

page(s)

195-247

1 reference

Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria

9 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

The aquaporins, blueprints for cellular plumbing systems.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Aquaporins and ion conductance

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Placement of protein and RNA structures into a 5 A-resolution map of the 50S ribosomal subunit

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Fibronectin extension and unfolding within cell matrix fibrils controlled by cytoskeletal tension

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Forced detachment of the CD2-CD58 complex

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

How hormone receptor-DNA binding affects nucleosomal DNA: the role of symmetry

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Cellular and molecular biology of the aquaporin water channels

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Reconstitution and functional comparison of purified GlpF and AqpZ, the glycerol and water channels from Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Functional reconstitution and characterization of AqpZ, the E. coli water channel protein.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Catalytic site forms and controls in ATP synthase catalysis

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Mechanism of the F(1)F(0)-type ATP synthase, a biological rotary motor

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Transient accumulation of elastic energy in proton translocating ATP synthase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Structure of a bacterial 30S ribosomal subunit at 5.5 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Comparison of the early stages of forced unfolding for fibronectin type III modules

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Excitons in a photosynthetic light-harvesting system: A combined molecular dynamics, quantum chemistry, and polaron model study

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Excitation transfer in the peridinin-chlorophyll-protein of Amphidinium carterae

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

A refined structure of human aquaporin-1

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Climatic impact of tropical lowland deforestation on nearby montane cloud forests

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

The fold of human aquaporin 1.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Epithelial aquaporins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Structure of the subunit c oligomer in the F1Fo ATP synthase: model derived from solution structure of the monomer and cross-linking in the native enzyme

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

The b subunit of Escherichia coli ATP synthase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Energy transduction in ATP synthase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Reversible unfolding of fibronectin type III and immunoglobulin domains provides the structural basis for stretch and elasticity of titin and fibronectin

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Coupling proton movements to c-ring rotation in F(1)F(o) ATP synthase: aqueous access channels and helix rotations at the a-c interface

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Structural interpretations of F(0) rotary function in the Escherichia coli F(1)F(0) ATP synthase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Structure of a glycerol-conducting channel and the basis for its selectivity

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Synthase (H(+) ATPase): coupling between catalysis, mechanical work, and proton translocation

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Identifying unfolding intermediates of FN-III(10) by steered molecular dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Unfolding of titin domains studied by molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Transmembrane crosstalk between the extracellular matrix--cytoskeleton crosstalk

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

The structure of the central stalk in bovine F(1)-ATPase at 2.4 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Solution structure of the transmembrane H+-transporting subunit c of the F1F0 ATP synthase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Mechanisms of selectivity in channels and enzymes studied with interactive molecular dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Molecular models of the structural arrangement of subunits and the mechanism of proton translocation in the membrane domain of F(1)F(0) ATP synthase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Structural determinants of MscL gating studied by molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Molecular dynamics simulation of a bilayer of 200 lipids in the gel and in the liquid crystal phase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Pause and rotation of F(1)-ATPase during catalysis

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Water conduction through the hydrophobic channel of a carbon nanotube

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

VMD: visual molecular dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Steered molecular dynamics investigations of protein function.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Steered molecular dynamics and mechanical functions of proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Steered molecular dynamics simulation of the Rieske subunit motion in the cytochrome bc(1) complex

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Equilibrium free-energy differences from nonequilibrium measurements: A master-equation approach

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Nonequilibrium Equality for Free Energy Differences

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Energetics of glycerol conduction through aquaglyceroporin GlpF.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

The mechanism of glycerol conduction in aquaglyceroporins.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

The preferred stoichiometry of c subunits in the rotary motor sector of Escherichia coli ATP synthase is 10.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Genetic fusions of subunit c in the F0 sector of H+-transporting ATP synthase. Functional dimers and trimers and determination of stoichiometry by cross-linking analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Arrangement of the multicopy H+-translocating subunit c in the membrane sector of the Escherichia coli F1F0 ATP synthase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

ATP synthase: an electrochemical transducer with rotatory mechanics

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Inter-subunit rotation and elastic power transmission in F0F1-ATPase.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

The alpha/beta interfaces of alpha(1)beta(1), alpha(3)beta(3), and F1: domain motions and elastic energy stored during gamma rotation

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Direct observation of the rotation of epsilon subunit in F1-ATPase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

A rotary molecular motor that can work at near 100% efficiency

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Binding of the estrogen receptor to DNA. The role of waters

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

A structural model for force regulated integrin binding to fibronectin's RGD-synergy site

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Forced unfolding of the fibronectin type III module reveals a tensile molecular recognition switch

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

2.0 A crystal structure of a four-domain segment of human fibronectin encompassing the RGD loop and synergy region

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Impaired hearing in mice lacking aquaporin-4 water channels

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

GROMACS 3.0: a package for molecular simulation and trajectory analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Formation of amyloid-like fibrils by self-association of a partially unfolded fibronectin type III module

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

The key event in force-induced unfolding of Titin's immunoglobulin domains

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Dissecting the molecular origins of specific protein-nucleic acid recognition: hydrostatic pressure and molecular dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

A dynamic analysis of the rotation mechanism for conformational change in F(1)-ATPase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Dynamics of folded proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Structure of bovine mitochondrial F(1)-ATPase with nucleotide bound to all three catalytic sites: implications for the mechanism of rotary catalysis

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Role of the delta subunit in enhancing proton conduction through the F0 of the Escherichia coli F1F0 ATPase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Structural determinants of water permeation through aquaporin-1

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Rotation of Escherichia coli F(1)-ATPase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Direct observation of the rotation of F1-ATPase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

The mechanical hierarchies of fibronectin observed with single-molecule AFM

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

The molecular elasticity of the extracellular matrix protein tenascin

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Dynamics and elasticity of the fibronectin matrix in living cell culture visualized by fibronectin-green fluorescent protein

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Reverse engineering a protein: the mechanochemistry of ATP synthase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Forced unfolding of fibronectin type 3 modules: an analysis by biased molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Viscoelastic dynamics of actin filaments coupled to rotary F-ATPase: angular torque profile of the enzyme

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Kinetic modeling of rotary CF0F1-ATP synthase: storage of elastic energy during energy transduction

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Predicting the structure of apolipoprotein A-I in reconstituted high-density lipoprotein disks

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Structure and dynamics of a proton wire: a theoretical study of H+ translocation along the single-file water chain in the gramicidin A channel

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Molecular mechanism of H+ conduction in the single-file water chain of the gramicidin channel

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Isolation of the cDNA for erythrocyte integral membrane protein of 28 kilodaltons: member of an ancient channel family

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Molecular dynamics of synthetic leucine-serine ion channels in a phospholipid membrane

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Structural changes linked to proton translocation by subunit c of the ATP synthase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Visualization of a water-selective pore by electron crystallography in vitreous ice

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

On what makes the gamma subunit spin during ATP hydrolysis by F(1).

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Focus on "Effect of expressing the water channel aquaporin-1 on the CO2 permeability of Xenopus oocytes".

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

The mechanical stability of immunoglobulin and fibronectin III domains in the muscle protein titin measured by atomic force microscopy

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Molecular dynamics investigation of primary photoinduced events in the activation of rhodopsin

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Membrane proteins: Aquaporins--channels without ions.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Fibronectin fibrillogenesis: a paradigm for extracellular matrix assembly

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

The molecular mechanism of ATP synthesis by F1F0-ATP synthase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Crystal structure of a heparin- and integrin-binding segment of human fibronectin.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Molecular architecture of the rotary motor in ATP synthase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Structural basis of water-specific transport through the AQP1 water channel

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Elastic energy storage in beta-sheets with application to F1-ATPase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Control of the selectivity of the aquaporin water channel family by global orientational tuning

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Molecular imaging of Escherichia coli F0F1-ATPase in reconstituted membranes using atomic force microscopy

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

On the role of Arg-210 and Glu-219 of subunit a in proton translocation by the Escherichia coli F0F1-ATP synthase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Structural insights into the mechanical regulation of molecular recognition sites

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Two-dimensional crystallization of the light-harvesting I-reaction centre photounit from Rhodospirillum rubrum

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

The three-dimensional structure of aquaporin-1.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Energy transduction in the F1 motor of ATP synthase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

ATP synthase: what we know about ATP hydrolysis and what we do not know about ATP synthesis

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

AMBER: Assisted model building with energy refinement. A general program for modeling molecules and their interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Tandem sequence repeats in transmembrane channel proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Investigating a back door mechanism of actin phosphate release by steered molecular dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Crystal structure of the extracellular segment of integrin alpha Vbeta3

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Crystal structure of the extracellular segment of integrin alpha Vbeta3 in complex with an Arg-Gly-Asp ligand

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Resolution of distinct rotational substeps by submillisecond kinetic analysis of F1-ATPase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Reconstitution of functional water channels in liposomes containing purified red cell CHIP28 protein

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Hydrophilicity of cavities in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Molecular dynamics study of aquaporin-1 water channel in a lipid bilayer

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Pressure-induced water transport in membrane channels studied by molecular dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Substrate specificity and transport properties of the glycerol facilitator of Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

Importance of Facilitated Diffusion for Effective Utilization of Glycerol by Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2803%2966006-7

7 January 2021

10.1016/S0065-3233(03)66006-7

Identifiers

DOI

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/x6bfmmmaczbg5ffj66qes4lxj4

30 July 2022

mapped directly with Wikidata item

Fatcat ID

release_x6bfmmmaczbg5ffj66qes4lxj4

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/x6bfmmmaczbg5ffj66qes4lxj4

30 July 2022

mapped directly with Wikidata item

https://api.fatcat.wiki/v0/release/x6bfmmmaczbg5ffj66qes4lxj4

1 reference

30 July 2022