(Q35606116)

9 August 2017

title

FlowClus: efficiently filtering and denoising pyrosequenced amplicons (English)

1 reference

9 August 2017

1 reference

John M Gaspar

1

1 reference

9 August 2017

W Kelley Thomas

series ordinal

2

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9 August 2017

publication date

27 March 2015

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9 August 2017

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9 August 2017

volume

16

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9 August 2017

page(s)

105

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Creative Commons Attribution 4.0 International

9 August 2017

copyright license

start time

27 March 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Routine performance and errors of 454 HLA exon sequencing in diagnostics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380255

Quantitatively different, yet qualitatively alike: a meta-analysis of the mouse core gut microbiome with a view towards the human gut microbiome

27 July 2018

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Shining a light on dark sequencing: characterising errors in Ion Torrent PGM data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380255

Assessing the consequences of denoising marker-based metagenomic data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380255

Filtering duplicate reads from 454 pyrosequencing data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380255

PCR biases distort bacterial and archaeal community structure in pyrosequencing datasets

27 July 2018

1 reference

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An integrated semiconductor device enabling non-optical genome sequencing

27 July 2018

1 reference

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UCHIME improves sensitivity and speed of chimera detection

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380255

Systematic exploration of error sources in pyrosequencing flowgram data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380255

Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380255

Removing noise from pyrosequenced amplicons

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380255

Characteristics of 454 pyrosequencing data--enabling realistic simulation with flowsim

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380255

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380255

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380255

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

27 July 2018

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Accurate determination of microbial diversity from 454 pyrosequencing data

27 July 2018

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Viral population estimation using pyrosequencing

27 July 2018

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Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.

27 July 2018

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Clustal W and Clustal X version 2.0

27 July 2018

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Accuracy and quality of massively parallel DNA pyrosequencing

27 July 2018

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HECTOR: a parallel multistage homopolymer spectrum based error corrector for 454 sequencing data

27 July 2018

1 reference

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Denoising PCR-amplified metagenome data

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380255

QIIME allows analysis of high-throughput community sequencing data

25 September 2018

1 reference

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Genome sequencing in microfabricated high-density picolitre reactors

25 September 2018

1 reference

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The phylogeny of prokaryotes

25 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-015-0532-1

10.1186/S12859-015-0532-1

21 January 2018

Identifiers

DOI

1 reference

9 August 2017

DBLP publication ID

journals/bmcbi/GasparT15

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

9 August 2017

1 reference