(Q33621869)

28 July 2017

title

HECTOR: a parallel multistage homopolymer spectrum based error corrector for 454 sequencing data (English)

1 reference

28 July 2017

Adrianto Wirawan

1

1 reference

28 July 2017

Robert S Harris

2

1 reference

28 July 2017

Yongchao Liu

3

1 reference

28 July 2017

Bertil Schmidt

4

1 reference

28 July 2017

Jan Schröder

5

1 reference

28 July 2017

publication date

6 May 2014

1 reference

28 July 2017

1 reference

28 July 2017

volume

15

1 reference

28 July 2017

page(s)

131

1 reference

Creative Commons Attribution 2.0 Generic

28 July 2017

copyright license

start time

6 May 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

Genomic analysis of the native European Solanum species, S. dulcamara.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

PyroHMMsnp: an SNP caller for Ion Torrent and 454 sequencing data.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

Shining a light on dark sequencing: characterising errors in Ion Torrent PGM data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

Long read alignment based on maximal exact match seeds

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

A survey of error-correction methods for next-generation sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

GAGE: A critical evaluation of genome assemblies and assembly algorithms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

ECHO: a reference-free short-read error correction algorithm

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

SHRiMP2: sensitive yet practical SHort Read Mapping

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

Removing noise from pyrosequenced amplicons

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

HiTEC: accurate error correction in high-throughput sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

Quake: quality-aware detection and correction of sequencing errors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

Correction of sequencing errors in a mixed set of reads

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

Fast and accurate long-read alignment with Burrows-Wheeler transform

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

SHREC: a short-read error correction method

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

Fast and accurate short read alignment with Burrows-Wheeler transform

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

Accurate whole human genome sequencing using reversible terminator chemistry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

Short read fragment assembly of bacterial genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

Accuracy and quality of massively parallel DNA pyrosequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

Genome sequencing in microfabricated high-density picolitre reactors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023493

Fragment assembly with short reads

21 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-131

Correcting errors in short reads by multiple alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-131

Fast, accurate error-correction of amplicon pyrosequences using Acacia.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-131

Reptile: representative tiling for short read error correction

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-131

Aggressive assembly of pyrosequencing reads with mates

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-131

Real-time DNA sequencing from single polymerase molecules

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24885381

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-15-131

1 reference

journals/bmcbi/WirawanHLSS14

28 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

28 July 2017

1 reference