(Q35625954)

9 August 2017

title

Testing in Microbiome-Profiling Studies with MiRKAT, the Microbiome Regression-Based Kernel Association Test (English)

1 reference

9 August 2017

0 references

Michael C Wu

10

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author name string

Ni Zhao

1

1 reference

9 August 2017

Jun Chen

2

1 reference

9 August 2017

Ian M Carroll

3

1 reference

9 August 2017

Tamar Ringel-Kulka

4

1 reference

9 August 2017

Michael P Epstein

5

1 reference

9 August 2017

Hua Zhou

6

1 reference

9 August 2017

Jin J Zhou

7

1 reference

9 August 2017

Yehuda Ringel

8

1 reference

9 August 2017

Hongzhe Li

9

1 reference

9 August 2017

language of work or name

English

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publication date

1 May 2015

1 reference

American Journal of Human Genetics

9 August 2017

published in

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9 August 2017

volume

96

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9 August 2017

issue

5

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9 August 2017

page(s)

797-807

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Fecal protease activity is associated with compositional alterations in the intestinal microbiota

9 August 2017

cites work

1 reference

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Gut metagenome in European women with normal, impaired and diabetic glucose control

12 July 2018

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Kernel machine SNP-set testing under multiple candidate kernels

12 July 2018

1 reference

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Genomic sequencing of uncultured microorganisms from single cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

Optimal unified approach for rare-variant association testing with application to small-sample case-control whole-exome sequencing studies

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

A permutation procedure to correct for confounders in case-control studies, including tests of rare variation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

Associating microbiome composition with environmental covariates using generalized UniFrac distances

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

Rare-variant association testing for sequencing data with the sequence kernel association test

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

Enterotypes of the human gut microbiome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

Shifting the balance: antibiotic effects on host-microbiota mutualism

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

Relationship between genomic distance-based regression and kernel machine regression for multi-marker association testing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

Disordered microbial communities in the upper respiratory tract of cigarette smokers

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

Powerful SNP-set analysis for case-control genome-wide association studies

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

12 July 2018

A primer on metagenomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

A core gut microbiome in obese and lean twins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

Estimation and testing for the effect of a genetic pathway on a disease outcome using logistic kernel machine regression via logistic mixed models

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

Reproducing kernel hilbert spaces regression methods for genomic assisted prediction of quantitative traits

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

A powerful and flexible multilocus association test for quantitative traits

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

Semiparametric regression of multidimensional genetic pathway data: least-squares kernel machines and linear mixed models

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

UniFrac: a new phylogenetic method for comparing microbial communities

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

Community structure and metabolism through reconstruction of microbial genomes from the environment

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

A global test for groups of genes: testing association with a clinical outcome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

Fecal proteases from diarrheic-IBS and ulcerative colitis patients exert opposite effect on visceral sensitivity in mice.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570290

Conservation of primary structure in 16S ribosomal RNA

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25957468

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.AJHG.2015.04.003

1 reference

9 August 2017

1 reference

9 August 2017

1 reference