(Q35632972)

9 August 2017

title

The influence of interdomain interactions on the intradomain motions in yeast phosphoglycerate kinase: a molecular dynamics study (English)

1 reference

9 August 2017

Erika Balog

1

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9 August 2017

Monique Laberge

series ordinal

2

1 reference

9 August 2017

Judit Fidy

series ordinal

3

1 reference

9 August 2017

language of work or name

English

0 references

publication date

8 December 2006

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9 August 2017

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9 August 2017

volume

92

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9 August 2017

issue

5

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9 August 2017

page(s)

1709-1716

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Scalable molecular dynamics with NAMD

9 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Asymmetric effect of domain interactions on the kinetics of folding in yeast phosphoglycerate kinase.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Correlation between conformational stability of the ternary enzyme-substrate complex and domain closure of 3-phosphoglycerate kinase.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Structure of the ADP complex of the 3-phosphoglycerate kinase from Bacillus stearothermophilus at 1.65 A.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Protein conformer selection by sequence-dependent packing contacts in crystals of 3-phosphoglycerate kinase

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Structural principles governing domain motions in proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Canonical dynamics: Equilibrium phase-space distributions

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Systematic analysis of domain motions in proteins from conformational change: new results on citrate synthase and T4 lysozyme

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Closed structure of phosphoglycerate kinase from Thermotoga maritima reveals the catalytic mechanism and determinants of thermal stability

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Synergistic effects of substrate-induced conformational changes in phosphoglycerate kinase activation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Effects of C-terminal deletions on the conformational state and denaturation of phosphoglycerate kinase

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Sequence and structure of yeast phosphoglycerate kinase

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Structure of horse muscle phosphoglycerate kinase. Some results on the chain conformation, substrate binding and evolution of the molecule from a 3 angstrom Fourier map.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Collective motions in proteins: A covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Crystal structure of the binary complex of pig muscle phosphoglycerate kinase and its substrate 3-phospho-D-glycerate

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Domain motions in phosphoglycerate kinase: determination of interdomain distance distributions by site-specific labeling and time-resolved fluorescence energy transfer

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Sequence, structure and activity of phosphoglycerate kinase: a possible hinge-bending enzyme

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Domain interactions direct misfolding and amyloid formation of yeast phosphoglycerate kinase.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Interdomain interactions in hinge-bending transitions

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Structure of a kinetic protein folding intermediate by equilibrium amide exchange

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Domain motions in dihydrofolate reductase: a molecular dynamics study

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Structural mechanisms for domain movements in proteins

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Fluctuation and Cross-correlation Analysis of Protein Motions Observed in Nanosecond Molecular Dynamics Simulations

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796818

Domain behavior during the folding of a thermostable phosphoglycerate kinase

15 November 2018

1 reference

12 December 2020

Phosphotransfer hinges in PGK

1 reference

12 December 2020

Structure and dynamics of calcium-activated calmodulin in solution.

1 reference

12 December 2020

Role of the C-terminal helix in the folding and stability of yeast phosphoglycerate kinase

1 reference

12 December 2020

Sequential domain refolding of pig muscle 3-phosphoglycerate kinase: kinetic analysis of reactivation

1 reference

12 December 2020

The role of the C-terminal lysine in the hinge bending mechanism of yeast phosphoglycerate kinase

1 reference

12 December 2020

Conformational changes in yeast phosphoglycerate kinase upon substrate binding

1 reference

12 December 2020

Is the structure of the N-domain of phosphoglycerate kinase affected by isolation from the intact molecule?

1 reference

12 December 2020

Efficient expression and characterization of isolated structural domains of yeast phosphoglycerate kinase generated by site-directed mutagenesis

1 reference

12 December 2020

Folding and functional complementation of engineered fragments from yeast phosphoglycerate kinase

1 reference

12 December 2020

Unfolding-refolding of the domains in yeast phosphoglycerate kinase: comparison with the isolated engineered domains

1 reference

12 December 2020

10.1529/BIOPHYSJ.106.093195

Identifiers

DOI

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9 August 2017

1 reference

9 August 2017

1 reference