(Q35647520)

9 August 2017

title

Similarity of genes horizontally acquired by Escherichia coli and Salmonella enterica is evidence of a supraspecies pangenome (English)

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9 August 2017

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1 reference

Katherine A Karberg

1

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9 August 2017

Gary J Olsen

series ordinal

2

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9 August 2017

James J Davis

series ordinal

3

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9 August 2017

language of work or name

English

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publication date

29 November 2011

1 reference

Proceedings of the National Academy of Sciences of the United States of America

9 August 2017

published in

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9 August 2017

volume

108

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9 August 2017

issue

50

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9 August 2017

page(s)

20154-20159

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Characterizing the Native Codon Usages of a Genome: An Axis Projection Approach

9 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

Accessing the SEED genome databases via Web services API: tools for programmers

27 July 2018

1 reference

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A catalog of reference genomes from the human microbiome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

Modal codon usage: assessing the typical codon usage of a genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

The emergence and fate of horizontally acquired genes in Escherichia coli

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

The impact of horizontal gene transfer in shaping operons and protein interaction networks--direct evidence of preferential attachment

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

Database resources of the National Center for Biotechnology Information

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

The fate of laterally transferred genes: life in the fast lane to adaptation or death

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

Intergeneric bacterial matings

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

27 July 2018

The microbial pan-genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

Examining bacterial species under the specter of gene transfer and exchange

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

The source of laterally transferred genes in bacterial genomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

Twenty thousand ORFan microbial protein families for the biologist?

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

Genome sequence of enterohaemorrhagic Escherichia coli O157:H7

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

Finding families for genomic ORFans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

Amelioration of bacterial genomes: rates of change and exchange

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

Codon catalog usage and the genome hypothesis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

Codon usage in regulatory genes in Escherichia coli does not reflect selection for 'rare' codons

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

The neighbor-joining method: a new method for reconstructing phylogenetic trees

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

An evolutionary perspective on synonymous codon usage in unicellular organisms

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

The barrier to recombination between Escherichia coli and Salmonella typhimurium is disrupted in mismatch-repair mutants.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

Evidence for horizontal gene transfer in Escherichia coli speciation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

Evolution by acquisition: the case for horizontal gene transfers

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250135

Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli

27 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1109451108

Possible origins of CTnBST, a conjugative transposon found recently in a human colonic Bacteroides strain

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1109451108

Genome-wide experimental determination of barriers to horizontal gene transfer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1109451108

H-NS, the genome sentinel.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1109451108

The fate of new bacterial genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1109451108

Bootstrap Methods: Another Look at the Jackknife

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1109451108

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1109451108

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22128332

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1109451108

1 reference

9 August 2017

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1 reference

9 August 2017

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