(Q35652056)

English

Intron Evolution and Information processing in the DNA polymerase alpha gene in spirotrichous ciliates: a hypothesis for interconversion between DNA and RNA deletion

scientific article published on February 2007

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scholarly article

1 reference

Europe PubMed Central

9 August 2017

Intron Evolution and Information processing in the DNA polymerase alpha gene in spirotrichous ciliates: a hypothesis for interconversion between DNA and RNA deletion (English)

1 reference

Europe PubMed Central

9 August 2017

information processing

1 reference

based on heuristic

inferred from title

Laura Landweber

6

object named as

Laura F Landweber

1 reference

Europe PubMed Central

9 August 2017

1

object named as

Wei-Jen Chang

1 reference

Europe PubMed Central

9 August 2017

author name string

Victoria M Addis

2

1 reference

Europe PubMed Central

9 August 2017

Anya J Li

3

1 reference

Europe PubMed Central

9 August 2017

Elin Axelsson

4

1 reference

Europe PubMed Central

9 August 2017

David H Ardell

5

1 reference

Europe PubMed Central

9 August 2017

publication date

1 February 2007

1 reference

Europe PubMed Central

9 August 2017

1 reference

Europe PubMed Central

9 August 2017

2

1 reference

Europe PubMed Central

9 August 2017

6

1 reference

Europe PubMed Central

9 August 2017

https://scigraph.springernature.com/pub.10.1186/1745-6150-2-6

0 references

The evolutionary origin of a complex scrambled gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Conservation of tandem stop codons in yeasts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Sequence features of Oxytricha trifallax (class Spirotrichea) macronuclear telomeric and subtelomeric sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

WebLogo: A Sequence Logo Generator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Polymorphism, recombination and alternative unscrambling in the DNA polymerase alpha gene of the ciliate Stylonychia lemnae (Alveolata; class Spirotrichea).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

The COG database: an updated version includes eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Selection on the genes of Euplotes crassus Tec1 and Tec2 transposons: evolutionary appearance of a programmed frameshift in a Tec2 gene encoding a tyrosine family site-specific recombinase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Shifty ciliates: frequent programmed translational frameshifting in euplotids

1 reference

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12 July 2018

Random sequencing of Paramecium somatic DNA.

1 reference

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12 July 2018

The Bioperl toolkit: Perl modules for the life sciences

1 reference

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12 July 2018

Coding properties of macronuclear DNA molecules in Sterkiella nova (Oxytricha nova).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Reexamining the polyadenylation signal: were we wrong about AAUAAA?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Genome gymnastics: unique modes of DNA evolution and processing in ciliates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Both subtelomeric regions are required and sufficient for specific DNA fragmentation during macronuclear development in Stylonychia lemnae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

A unique pattern of intrastrand anomalies in base composition of the DNA in hypotrichs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

BodyMap: a collection of 3' ESTs for analysis of human gene expression information.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Patterns of variant polyadenylation signal usage in human genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Evolution and assembly of an extremely scrambled gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

In silico detection of control signals: mRNA 3'-end-processing sequences in diverse species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Faithful expression of a heterologous gene carried on an artificial macronuclear chromosome in Euplotes crassus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

A subtelomeric DNA sequence is required for correct processing of the macronuclear DNA sequences during macronuclear development in the hypotrichous ciliate Stylonychia lemnae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Evolution of the scrambled germline gene encoding alpha-telomere binding protein in three hypotrichous ciliates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Conserved DNA sequences adjacent to chromosome fragmentation and telomere addition sites in Euplotes crassus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Sequence diversity in the intron, flanking sequences and coding region of the DNA polymerase alpha gene of Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Evolution of internal eliminated segments and scrambling in the micronuclear gene encoding DNA polymerase alpha in two Oxytricha species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

The germline gene encoding DNA polymerase alpha in the hypotrichous ciliate Oxytricha nova is extremely scrambled

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

A gene-sized DNA molecule encoding heat-shock protein 70 in Oxytricha nova

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

The DNA of ciliated protozoa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Characterization of transcription initiation, translation initiation, and poly(A) addition sites in the gene-sized macronuclear DNA molecules of Euplotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Macronuclear gene-sized molecules of hypotrichs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

An improved PCR method for walking in uncloned genomic DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Synthetic donor and acceptor splice sites function in an RNA polymerase B (II) transcription unit.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

All gene-sized DNA molecules in four species of hypotrichs have the same terminal sequence and an unusual 3' terminus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Human DNA polymerase alpha gene expression is cell proliferation dependent and its primary structure is similar to both prokaryotic and eukaryotic replicative DNA polymerases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Nucleotide sequence and expression of two beta-tubulin genes in Stylonychia lemnae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Human DNA polymerase alpha: predicted functional domains and relationships with viral DNA polymerases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Micronuclear genome organization in Euplotes crassus: a transposonlike element is removed during macronuclear development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Developmentally coordinated en masse excision of a highly repetitive element in E. crassus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

The POL1 gene from the fission yeast, Schizosaccharomyces pombe, shows conserved amino acid blocks specific for eukaryotic DNA polymerases alpha.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

The biochemistry of 3'-end cleavage and polyadenylation of messenger RNA precursors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

The beta-tubulin genes of Paramecium are interrupted by two 27 bp introns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

3' non-coding region sequences in eukaryotic messenger RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

12 July 2018

Macronuclear molecules encoding actins in spirotrichs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

25 September 2018

Characterization of the gene encoding the catalytic subunit of the DNA polymerase alpha from Toxoplasma gondii.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

25 September 2018

The macronuclear gamma-tubulin-encoding gene of Euplotes octocarinatus contains two introns and an in-frame TGA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805493

25 September 2018

Transcriptional Control Signals of a Eukaryotic Protein-Coding Gene

1 reference

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25 September 2018

Divergence between two Antarctic species of the ciliate Euplotes, E. focardii and E. nobilii, in the expression of heat-shock protein 70 genes

1 reference

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25 September 2018

Characterization of chromosome fragmentation in two protozoans and identification of a candidate fragmentation sequence in Euplotes crassus

1 reference

https://pubmed.ncbi.nlm.nih.gov/17270054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A micronuclear locus containing three protein-coding genes remains linked during macronuclear development in the spirotrichous ciliate Holosticha

1 reference

https://pubmed.ncbi.nlm.nih.gov/17270054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Differential DNA amplification and copy number control in the hypotrichous ciliate Euplotes crassus

1 reference

https://pubmed.ncbi.nlm.nih.gov/17270054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of gene scrambling in ciliate micronuclear genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17270054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene structure of the ciliate Sterkiella histriomuscorum based on a combined analysis of DNA and cDNA sequences from 21 macronuclear chromosomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17270054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inverted terminal repeat sequence in the macronuclear DNA of Stylonychia pustulata

1 reference

https://pubmed.ncbi.nlm.nih.gov/17270054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alternative processing during development of a macronuclear chromosome family in Oxytricha fallax

1 reference

https://pubmed.ncbi.nlm.nih.gov/17270054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Differential amplification of pheromone genes of the ciliateEuplotes raikovi

1 reference

https://pubmed.ncbi.nlm.nih.gov/17270054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Detection of polyadenylation signals in human DNA sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/17270054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of programmed DNA rearrangements in a scrambled gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/17270054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A new scrambled gene in the ciliate Uroleptus

1 reference

https://pubmed.ncbi.nlm.nih.gov/17270054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Coding properties of Oxytricha trifallax (Sterkiella histriomuscorum) macronuclear chromosomes: analysis of a pilot genome project

1 reference

https://pubmed.ncbi.nlm.nih.gov/17270054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1745-6150-2-6

1 reference

Europe PubMed Central

9 August 2017

Dimensions Publication ID

0 references

1 reference

Europe PubMed Central

9 August 2017

1 reference

Europe PubMed Central

9 August 2017

ResearchGate publication ID

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