(Q35659539)

9 August 2017

title

Systems vaccinology: its promise and challenge for HIV vaccine development (English)

1 reference

9 August 2017

1

Helder I Nakaya

2 references

9 August 2017

https://orcid.org/0000-0001-5297-9108

Bali Pulendran

series ordinal

2

object named as

Bali Pulendran

1 reference

9 August 2017

publication date

1 January 2012

1 reference

Current Opinion in HIV and AIDS

9 August 2017

published in

1 reference

9 August 2017

volume

7

1 reference

9 August 2017

issue

1

1 reference

9 August 2017

page(s)

24-31

1 reference

Evaluating immune correlates in HIV type 1 vaccine efficacy trials: what RV144 may provide

9 August 2017

cites work

1 reference

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12 July 2018

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Systems biology of vaccination for seasonal influenza in humans

12 July 2018

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Immunological mechanisms of vaccination

12 July 2018

1 reference

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Cell subset prediction for blood genomic studies

12 July 2018

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Systems biology approaches to new vaccine development

12 July 2018

1 reference

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Cellular decision making and biological noise: from microbes to mammals

12 July 2018

1 reference

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Protein microarrays and novel detection platforms

12 July 2018

1 reference

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Implementing prognostic and predictive biomarkers in CRC clinical trials

12 July 2018

1 reference

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Transcriptomes of the B and T lineages compared by multiplatform microarray profiling

12 July 2018

1 reference

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Contributions of humoral and cellular immunity to vaccine-induced protection in humans.

12 July 2018

1 reference

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12 July 2018

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Vaccines and the future of human immunology

12 July 2018

1 reference

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HIV vaccines: lessons learned and the way forward

12 July 2018

1 reference

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Deconvoluting post-transplant immunity: cell subset-specific mapping reveals pathways for activation and expansion of memory T, monocytes and B cells

12 July 2018

1 reference

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The road from discovery to clinical diagnostics: lessons learned from the first FDA-cleared in vitro diagnostic multivariate index assay of proteomic biomarkers

12 July 2018

1 reference

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Advances in the vaccination of the elderly against influenza: role of a high-dose vaccine

12 July 2018

1 reference

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Functional roles for noise in genetic circuits

12 July 2018

1 reference

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An interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosis

12 July 2018

1 reference

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The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

12 July 2018

1 reference

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Identifying HIV-1 host cell factors by genome-scale RNAi screening.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Assessing the human immune system through blood transcriptomics

12 July 2018

1 reference

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Single-cell NF-kappaB dynamics reveal digital activation and analogue information processing.

12 July 2018

1 reference

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Cell type-specific gene expression differences in complex tissues

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Use of logic theory in understanding regulatory pathway signaling in response to infection

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Stochastic and delayed stochastic models of gene expression and regulation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Vaccination with ALVAC and AIDSVAX to prevent HIV-1 infection in Thailand

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Deconvolution of blood microarray data identifies cellular activation patterns in systemic lupus erythematosus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Host cell factors in HIV replication: meta-analysis of genome-wide studies

12 July 2018

1 reference

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Yellow fever vaccine induces integrated multilineage and polyfunctional immune responses

12 July 2018

1 reference

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Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans

12 July 2018

1 reference

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Inferring pathway activity toward precise disease classification

12 July 2018

1 reference

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Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication

12 July 2018

1 reference

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A modular analysis framework for blood genomics studies: application to systemic lupus erythematosus

12 July 2018

1 reference

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Vaccines: correlates of vaccine-induced immunity

12 July 2018

1 reference

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

12 July 2018

1 reference

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Transcriptome-wide noise controls lineage choice in mammalian progenitor cells

12 July 2018

1 reference

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Logic models of pathway biology

12 July 2018

1 reference

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Practical guidelines for assessing power and false discovery rate for a fixed sample size in microarray experiments

12 July 2018

1 reference

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Machine learning methods for predictive proteomics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Identification of host proteins required for HIV infection through a functional genomic screen

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Mammalian stress granules and processing bodies

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Calmodulin-dependent kinase IV links Toll-like receptor 4 signaling with survival pathway of activated dendritic cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

A pitfall in series of microarrays: the position of probes affects the cross-correlation of gene expression profiles

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Signal integration in the endoplasmic reticulum unfolded protein response

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Systems biology, metabolic modelling and metabolomics in drug discovery and development

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Gene expression patterns in blood leukocytes discriminate patients with acute infections

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Predicting stochastic gene expression dynamics in single cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis

12 July 2018

1 reference

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Gene selection and classification of microarray data using random forest.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Comparing independent microarray studies: the case of human embryonic stem cells

12 July 2018

1 reference

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Statistical considerations for vaccine immunogenicity trials. Part 2: Noninferiority and other statistical approaches to vaccine evaluation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Regulation of cap-dependent translation by eIF4E inhibitory proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer

12 July 2018

1 reference

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Opinion: Interpretation of the complexity of innate immune responses by functional genomics.

12 July 2018

1 reference

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Diagnosis of multiple cancer types by shrunken centroids of gene expression

12 July 2018

1 reference

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Gene expression profiling predicts clinical outcome of breast cancer

12 July 2018

1 reference

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Defective signaling in a subpopulation of CD4(+) T cells in the absence of Ca(2+)/calmodulin-dependent protein kinase IV

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Expression of Ca(2+)/calmodulin-dependent protein kinase IV (caMKIV) messenger RNA during murine embryogenesis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Knowledge-based analysis of microarray gene expression data by using support vector machines

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Quantitative modeling of stochastic systems in molecular biology by using stochastic Petri nets

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Stochastic mechanisms in gene expression

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Single and booster dose responses to an inactivated hepatitis A virus vaccine: comparison with immune serum globulin prophylaxis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

The role of serum haemagglutination-inhibiting antibody in protection against challenge infection with influenza A2 and B viruses

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Metabolic control analysis: a survey of its theoretical and experimental development

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

A 2020 vision for vaccines against HIV, tuberculosis and malaria

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Learning immunology from the yellow fever vaccine: innate immunity to systems vaccinology

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Moderated effect size and P-value combinations for microarray meta-analyses

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Large-scale optimization-based classification models in medicine and biology

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Regulation of osteoclast differentiation and function by the CaMK-CREB pathway.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Classification of microarrays to nearest centroids.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Calmodulin-dependent protein kinase IV regulates hematopoietic stem cell maintenance

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Combining multiple microarray studies and modeling interstudy variation.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Meta-analysis of microarrays: interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Calmodulin-dependent protein kinase IV during T-cell development

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

Combining probability from independent tests: the weighted Z-method is superior to Fisher's approach

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3253345

T cell responses are better correlates of vaccine protection in the elderly

15 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22156839

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Genome-scale RNAi screen for host factors required for HIV replication

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22156839

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1097/COH.0B013E32834DC37B

1 reference

9 August 2017

1 reference

9 August 2017

1 reference