(Q35663461)

9 August 2017

title

Select microRNAs are essential for early development in the sea urchin (English)

1 reference

9 August 2017

1 reference

2

Marlon Stoeckius

0 references

Jonas Maaskola

3

object named as

Jonas Maaskola

0 references

Nikolaus Rajewsky

9

object named as

Nikolaus Rajewsky

0 references

Celina Juliano

6

object named as

Celina Juliano

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author name string

Jia L Song

1

1 reference

9 August 2017

Marlon Stoeckius

2

1 reference

9 August 2017

Marc Friedländer

4

1 reference

9 August 2017

Nadezda Stepicheva

5

1 reference

9 August 2017

Celina Juliano

6

1 reference

9 August 2017

Svetlana Lebedeva

7

1 reference

9 August 2017

William Thompson

8

1 reference

9 August 2017

Gary M Wessel

10

1 reference

9 August 2017

language of work or name

English

0 references

publication date

3 December 2011

1 reference

9 August 2017

published in

Developmental Biology

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9 August 2017

volume

362

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9 August 2017

issue

1

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9 August 2017

page(s)

104-113

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miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

9 August 2017

cites work

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27 July 2018

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Experimentally based sea urchin gene regulatory network and the causal explanation of developmental phenomenology

27 July 2018

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27 July 2018

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Nanos functions to maintain the fate of the small micromere lineage in the sea urchin embryo

27 July 2018

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Deadenylation of maternal mRNAs mediated by miR-427 in Xenopus laevis embryos

27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion

27 July 2018

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Blocking Dishevelled signaling in the noncanonical Wnt pathway in sea urchins disrupts endoderm formation and spiculogenesis, but not secondary mesoderm formation

27 July 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

27 July 2018

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The deep evolution of metazoan microRNAs

27 July 2018

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MicroRNAs: target recognition and regulatory functions

27 July 2018

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Small silencing RNAs: an expanding universe

27 July 2018

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Revisiting the principles of microRNA target recognition and mode of action

27 July 2018

1 reference

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Most mammalian mRNAs are conserved targets of microRNAs

27 July 2018

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Widespread changes in protein synthesis induced by microRNAs

27 July 2018

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The impact of microRNAs on protein output

27 July 2018

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Temporal reciprocity of miRNAs and their targets during the maternal-to-zygotic transition in Drosophila

27 July 2018

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Discovering microRNAs from deep sequencing data using miRDeep

27 July 2018

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MicroRNAs and the advent of vertebrate morphological complexity

27 July 2018

1 reference

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Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands

27 July 2018

1 reference

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Evolutionary conservation of microRNA regulatory circuits: an examination of microRNA gene complexity and conserved microRNA-target interactions through metazoan phylogeny

27 July 2018

1 reference

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A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in Zebrafish.

27 July 2018

1 reference

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Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila

27 July 2018

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A slicer-mediated mechanism for repeat-associated siRNA 5' end formation in Drosophila

27 July 2018

1 reference

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The evolution of animal microRNA function.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

cis-regulatory processing of Notch signaling input to the sea urchin glial cells missing gene during mesoderm specification

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome

27 July 2018

1 reference

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The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint

27 July 2018

1 reference

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A distinct small RNA pathway silences selfish genetic elements in the germline

27 July 2018

1 reference

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A novel class of small RNAs in mouse spermatogenic cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

A novel class of small RNAs bind to MILI protein in mouse testes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

A germline-specific class of small RNAs binds mammalian Piwi proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

MicroRNA function in animal development

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

MicroRNA expression in zebrafish embryonic development

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Seawi--a sea urchin piwi/argonaute family member is a component of MT-RNP complexes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Combinatorial microRNA target predictions

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

MicroRNAs regulate brain morphogenesis in zebrafish

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Dicer-deficient mouse embryonic stem cells are defective in differentiation and centromeric silencing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Rapid microinjection of fertilized eggs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Gene regulatory network controlling embryonic specification in the sea urchin

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Dicer is essential for formation of the heterochromatin structure in vertebrate cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

The nuclear RNase III Drosha initiates microRNA processing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Identification of novel genes coding for small expressed RNAs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

The role of micromere signaling in Notch activation and mesoderm specification during sea urchin embryogenesis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Primer3 on the WWW for general users and for biologist programmers

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

LvNotch signaling mediates secondary mesenchyme specification in the sea urchin embryo

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Nuclear beta-catenin is required to specify vegetal cell fates in the sea urchin embryo.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Sequential expression of germ-layer specific molecules in the sea urchin embryo

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Mammalian microRNAs predominantly act to decrease target mRNA levels

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Dicer is required for the normal development of sea urchin, Hemicentrotus pulcherrimus.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Caspase-dependent conversion of Dicer ribonuclease into a death-promoting deoxyribonuclease.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Computational analysis of small RNA cloning data

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

A missing link in the sea urchin embryo gene regulatory network: hesC and the double-negative specification of micromeres.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

The transcriptome of the sea urchin embryo.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Germ line determinants are not localized early in sea urchin development, but do accumulate in the small micromere lineage.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Nodal/activin signaling establishes oral-aboral polarity in the early sea urchin embryo

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Nuclear beta-catenin-dependent Wnt8 signaling in vegetal cells of the early sea urchin embryo regulates gastrulation and differentiation of endoderm and mesodermal cell lineages.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Nodal and BMP2/4 signaling organizes the oral-aboral axis of the sea urchin embryo

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

Activation of pmar1 controls specification of micromeres in the sea urchin embryo

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

A regulatory gene network that directs micromere specification in the sea urchin embryo.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

LvDelta is a mesoderm-inducing signal in the sea urchin embryo and can endow blastomeres with organizer-like properties

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3254792

microRNA complements in deuterostomes: origin and evolution of microRNAs

25 September 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2011.11.015

Synaptotagmin I is involved in the regulation of cortical granule exocytosis in the sea urchin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2011.11.015

microRNA target predictions in animals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2011.11.015

MicroRNAs and the Operon paper

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2011.11.015

10.1016/J.YDBIO.2011.11.015

7 January 2021

Identifiers

DOI

1 reference

9 August 2017

1 reference

9 August 2017

1 reference