(Q35672171)

9 August 2017

title

Predicting coaxial helical stacking in RNA junctions (English)

1 reference

9 August 2017

4

Tamar Schlick

1 reference

9 August 2017

Christian Laing

1

1 reference

9 August 2017

Dongrong Wen

series ordinal

2

1 reference

9 August 2017

Jason T L Wang

series ordinal

3

1 reference

9 August 2017

language of work or name

English

0 references

publication date

14 September 2011

1 reference

9 August 2017

published in

Nucleic Acids Research

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9 August 2017

volume

40

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9 August 2017

issue

2

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9 August 2017

page(s)

487-498

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Creative Commons Attribution-NonCommercial 3.0 Unported

9 August 2017

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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12 July 2018

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RNA secondary structure analysis using RNAstructure

12 July 2018

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Crystal Structure of a Self-Spliced Group II Intron

12 July 2018

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12 July 2018

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Predicting helical coaxial stacking in RNA multibranch loops

12 July 2018

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A nomenclature of junctions and branchpoints in nucleic acids

12 July 2018

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Crystal structure of a bacterial ribonuclease P RNA.

12 July 2018

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Asymmetry in RNA pseudoknots: observation and theory

12 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Influence of the pi-pi interaction on the hydrogen bonding capacity of stacked DNA/RNA bases

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Conformational flexibility of four-way junctions in RNA.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

The Varkud satellite ribozyme

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

DiGIR1 and NaGIR1: naturally occurring group I-like ribozymes with unique core organization and evolved biological role

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Hierarchical, clustered protein interactions with U4/U6 snRNA: a biochemical role for U4/U6 proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Secondary structure prediction for aligned RNA sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Crystal structure of an RNA tertiary domain essential to HCV IRES-mediated translation initiation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

RNA tertiary interactions in the large ribosomal subunit: the A-minor motif

12 July 2018

1 reference

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Structure, folding and activity of the VS ribozyme: importance of the 2-3-6 helical junction

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Structures of helical junctions in nucleic acids

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Structure of the 30S ribosomal subunit

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

A phylogenetically conserved stem-loop structure at the 5' border of the internal ribosome entry site of hepatitis C virus is required for cap-independent viral translation.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Global structure of four-way RNA junctions studied using fluorescence resonance energy transfer

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Group I-like ribozymes with a novel core organization perform obligate sequential hydrolytic cleavages at two processing sites

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Capturing the structure of a catalytic RNA intermediate: the hammerhead ribozyme

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Thermodynamics of coaxially stacked helixes with GA and CC mismatches

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

A secondary-structure model for the self-cleaving region of Neurospora VS RNA.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Sequence dependence of stability for coaxial stacking of RNA helixes with Watson-Crick base paired interfaces

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Detailed molecular model for transfer ribonucleic acid

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

The General Structure of Transfer RNA Molecules

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Origin of DNA helical structure and its sequence dependence

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Structure of the three-way helical junction of the hepatitis C virus IRES element

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Topology of three-way junctions in folded RNAs

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

AA.AG@helix.ends: A:A and A:G base-pairs at the ends of 16 S and 23 S rRNA helices

25 September 2018

1 reference

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GNRA tetraloops make a U-turn

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258123

The importance of London dispersion forces in the maintenance of the deoxyribonucleic acid helix

25 September 2018

1 reference

12 December 2020

Stacking properties of a highly hydrophobic dinucleotide sequence, N6, N6-dimethyladenylyl(3' leads to 5')N6, N6-dimethyladenosine, occurring in 16--18-S ribosomal RNA

1 reference

12 December 2020

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1 reference

12 December 2020

Protein and Mg(2+)-induced conformational changes in the S15 binding site of 16 S ribosomal RNA

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12 December 2020

Folding of branched RNA species

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12 December 2020

Identifiers

DOI

10.1093/NAR/GKR629

1 reference

9 August 2017

1 reference

9 August 2017

1 reference