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Aspergillus nidulans as a model system to characterize the DNA damage response in eukaryotes

scientific article published on April 2004

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Europe PubMed Central

9 August 2017

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Aspergillus nidulans as a model system to characterize the DNA damage response in eukaryotes (English)

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9 August 2017

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Protein involved in the response to UV

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Ortholog(s) have DNA-(apurinic or apyrimidinic site) lyase activity, double-stranded DNA 3'-5' exodeoxyribonuclease activity, phosphodiesterase I activity

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Ortholog(s) have peptidyl-lysine N-acetyltransferase activity, acting on acetyl phosphate as donor activity

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Ortholog(s) have methylated-DNA-[protein]-cysteine S-methyltransferase activity and role in DNA dealkylation involved in DNA repair

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Ortholog of Ku80

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Putative protein with a predicted role in homologous recombination and DNA damage repair

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Ortholog(s) have role in meiotic mismatch repair, reciprocal meiotic recombination and MutLgamma complex, nucleus localization

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Ortholog(s) have polyubiquitin binding activity and role in double-strand break repair via single-strand annealing, removal of nonhomologous ends, nucleotide-excision repair, response to UV

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Ortholog(s) have 3' overhang single-stranded DNA endodeoxyribonuclease activity

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Ortholog(s) have ubiquitin conjugating enzyme activity, ubiquitin-protein transferase activity and role in UV-damage excision repair, free ubiquitin chain polymerization, postreplication repair, protein K63-linked ubiquitination

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Ortholog(s) have ATPase activity, DNA clamp loader activity and role in UV-damage excision repair, leading strand elongation, mitotic DNA damage checkpoint, sister chromatid cohesion

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Putative DNA helicase

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endodeoxyribonuclease, putative

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Predicted cyclin-dependent protein kinase activating kinase

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Ortholog(s) have cytosol, nucleus localization

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Putative a2+/calmodulin-dependent protein kinase

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Ortholog(s) have role in nucleotide-excision repair, pyrimidine dimer repair and nucleotide-excision repair complex localization

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Ortholog(s) have cytosol, nucleus localization

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Deoxycytidyl transferase, putative

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Ortholog(s) have damaged DNA binding, zinc ion binding activity and role in UV-damage excision repair, nucleotide-excision repair involved in interstrand cross-link repair, nucleotide-excision repair, DNA damage recognition

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Ortholog(s) have role in gene conversion at mating-type locus, termination of copy-synthesis, maintenance of DNA repeat elements, reciprocal meiotic recombination and nucleus, site of double-strand break localization

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Ortholog(s) have ubiquitin conjugating enzyme activity, ubiquitin-protein transferase activity and role in free ubiquitin chain polymerization, postreplication repair, protein K63-linked ubiquitination

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Ortholog(s) have role in DNA repair, intra-S DNA damage checkpoint, mitotic DNA replication checkpoint, mitotic G2 DNA damage checkpoint and checkpoint clamp complex, cytosol, site of double-strand break localization

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Protein with similarity to Rad50

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Ortholog(s) have DNA-directed DNA polymerase activity and role in DNA strand elongation involved in DNA replication, DNA synthesis involved in UV-damage excision repair

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Protein involved in DNA repair

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DNA repair protein Rhp26/Rad26, putative

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Ortholog(s) have cytoplasm localization

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Putative 1-phosphatidylinositol-3-kinase

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Putative replication protein

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Ortholog(s) have uracil DNA N-glycosylase activity, role in DNA repair and mitochondrion, nucleus localization

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ATP-dependent DNA helicase II

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Has domain(s) with predicted BLOC-1 complex localization

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Ortholog(s) have ATP binding, ATPase activity, dinucleotide insertion or deletion binding, heteroduplex DNA loop binding, single-stranded DNA binding activity and role in maintenance of DNA repeat elements, meiotic mismatch repair

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Ortholog(s) have role in DNA strand elongation involved in DNA replication, UV-damage excision repair and Elg1 RFC-like complex, cytosol, nucleus localization

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Ortholog(s) have role in mismatch repair, nucleotide-excision repair and nucleolus localization

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Ortholog(s) have 5'-deoxyribose-5-phosphate lyase activity, DNA primase activity, DNA-directed DNA polymerase activity

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Ortholog(s) have DNA ligase (ATP) activity, role in DNA ligation, DNA repair, Okazaki fragment processing involved in mitotic DNA replication and mitochondrion, nucleus localization

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Ortholog(s) have nucleus localization

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Ortholog(s) have role in DNA strand elongation involved in DNA replication, UV-damage excision repair and Elg1 RFC-like complex, cytosol, nucleus localization

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Protein with homology to PCNA-like DNA damage sensor

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Ortholog(s) have oxidized purine nucleobase lesion DNA N-glycosylase activity and role in base-excision repair, AP site formation, error-free translesion synthesis, telomere maintenance via telomerase

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Ortholog(s) have protein complex scaffold activity and role in mitotic DNA damage checkpoint, mitotic DNA replication checkpoint, mitotic DNA replication preinitiation complex assembly

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Protein with homology to Saccharomyces cerevisiae Rad51p and to bacterial RecA

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Has domain(s) with predicted DNA binding, DNA polymerase activity, DNA-directed DNA polymerase activity, role in DNA repair and nucleus localization

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Ortholog(s) have DNA translocase activity, double-stranded DNA binding activity

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Ortholog(s) have ATP-dependent 5'-3' DNA helicase activity, damaged DNA binding activity

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endonuclease, putative

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DNA damage binding protein, putative

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Ortholog(s) have double-stranded DNA binding, sequence-specific DNA binding, single-stranded DNA binding activity

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Putative DNA repair protein

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deoxyribodipyrimidine photo-lyase

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Putative dUTP pyrophosphatase with a predicted role in pyrimidine metabolism

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Ortholog(s) have cytosol, nucleus localization

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Ortholog(s) have ATP binding, ATPase activity, dinucleotide insertion or deletion binding, heteroduplex DNA loop binding, single-stranded DNA binding activity

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Ortholog(s) have Prp19 complex, cytosol, mitotic spindle pole body, spliceosomal complex localization

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Ortholog(s) have role in DNA recombination, double-strand break repair via nonhomologous end joining and DNA ligase IV complex, nuclear chromatin, nucleolus localization

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Ortholog(s) have role in nucleotide-excision repair, postreplication repair and nucleus, site of double-strand break localization

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Ortholog(s) have 3'-5' exonuclease activity, DNA-directed DNA polymerase activity, role in mitochondrial DNA replication and mitochondrion localization

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Putative 1-phosphatidylinositol-3-kinase

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Ortholog(s) have role in intra-S DNA damage checkpoint, mitotic DNA replication checkpoint, mitotic G2 DNA damage checkpoint and nuclear chromatin localization

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Ortholog(s) have role in regulation of transcription from RNA polymerase II promoter, transcription from RNA polymerase II promoter and cytosol, nucleus localization

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Ortholog(s) have role in nucleotide-excision repair, phosphorylation of RNA polymerase II C-terminal domain, transcription from RNA polymerase II promoter and TFIIK complex localization

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putative DNA mismatch repair protein

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Ortholog(s) have ATP-dependent 3'-5' DNA helicase activity, ATP-dependent 5'-3' DNA helicase activity, sequence-specific DNA binding activity

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RecQ type DNA helicase, putative

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The spindle assembly checkpoint protein mad2, putative

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Ortholog(s) have cyclin-dependent protein serine/threonine kinase regulator activity and role in phosphorylation of RNA polymerase II C-terminal domain, regulation of mitotic cell cycle, transcription from RNA polymerase II promoter

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Ortholog(s) have ubiquitin binding activity, role in negative regulation of protein catabolic process, nucleotide-excision repair, protein ubiquitination and cytosol, nuclear envelope localization

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Ortholog(s) have ATP binding, DNA-dependent ATPase activity, double-stranded DNA binding, recombinase activity, single-stranded DNA binding activity

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Ortholog(s) have role in rRNA processing, ribosomal small subunit assembly and CURI complex, UTP-C complex, cytosol localization

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Histone H2A

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DNA-directed polymerase kappa, putative

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Campothecin resistance conferring protein rcaA, putative

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Poly(ADP-ribose) polymerase (PARP)

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Ortholog(s) have crossover junction endodeoxyribonuclease activity

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Ortholog(s) have DNA-directed DNA polymerase activity, double-stranded DNA binding, mRNA binding, single-stranded DNA 3'-5' exodeoxyribonuclease activity, single-stranded DNA binding activity

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Has domain(s) with predicted DNA binding, catalytic activity, nuclease activity and role in DNA repair

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Ortholog(s) have DNA clamp loader activity and role in UV-damage excision repair, leading strand elongation, mitotic DNA replication checkpoint, sister chromatid cohesion

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Putative DNA repair protein

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Putative DNA polymerase theta

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Protein involved in G2/M transition DNA damage checkpoint

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Ortholog(s) have role in nucleotide-excision repair involved in interstrand cross-link repair and nucleus localization

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Ortholog(s) have role in transcription-coupled nucleotide-excision repair and Ddb1-Ckn1 complex, cytosol localization

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Ortholog(s) have ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity, polynucleotide 3'-phosphatase activity

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Putative poly(A) RNA polymerase

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Has domain(s) with predicted DNA-directed DNA polymerase activity, damaged DNA binding activity and role in DNA repair

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Ortholog(s) have phosphatidylinositol-3-phosphate binding, phosphatidylinositol-5-phosphate binding activity

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Putative serine/threonine kinase

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Ortholog of A. fumigatus Af293 : Afu6g13340, A. niger CBS 513.88 : An08g10020, A. oryzae RIB40 : AO090003000458, Neosartorya fischeri NRRL 181 : NFIA_059260 and Aspergillus wentii : Aspwe1_0022439

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Protein involved in DNA repair

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Aspergillus nidulans

object named as

Aspergillus nidulans

1 reference

Gustavo H Goldman

1

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author name string

Etta Kafer

series ordinal

2

1 reference

stated in

Europe PubMed Central

PubMed ID

14998526

retrieved

9 August 2017

language of work or name

1 reference

1 April 2004

1 reference

stated in

Europe PubMed Central

9 August 2017

Fungal Genetics and Biology

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stated in

Europe PubMed Central

9 August 2017

41

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stated in

Europe PubMed Central

9 August 2017

4

1 reference

stated in

Europe PubMed Central

9 August 2017

428-442

1 reference

stated in

Europe PubMed Central

PubMed ID

14998526

retrieved

9 August 2017

Identifiers

DOI

10.1016/J.FGB.2003.12.001

1 reference

stated in

Europe PubMed Central

9 August 2017

1 reference

Europe PubMed Central

PubMed ID

14998526

retrieved

9 August 2017

(Q35681355)

Aspergillus nidulans as a model system to characterize the DNA damage response in eukaryotes

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