(Q35689999)

English

Longitudinal analysis of peripheral blood T cell receptor diversity in patients with systemic lupus erythematosus by next-generation sequencing

scientific article published on 23 May 2015

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scholarly article

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Europe PubMed Central

PubMed publication ID

9 August 2017

Longitudinal analysis of peripheral blood T cell receptor diversity in patients with systemic lupus erythematosus by next-generation sequencing (English)

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

systemic lupus erythematosus

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Michelle A. Petri

6

object named as

Michelle Petri

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

author name string

Dharma R Thapa

1

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

Raffi Tonikian

2

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

Chao Sun

3

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

Mei Liu

4

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

Andrea Dearth

5

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

Francois Pepin

7

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

Ryan O Emerson

8

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

Ann Ranger

9

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

publication date

23 May 2015

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Europe PubMed Central

PubMed publication ID

9 August 2017

Arthritis Research and Therapy

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

17

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Europe PubMed Central

PubMed publication ID

9 August 2017

132

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Europe PubMed Central

PubMed publication ID

9 August 2017

copyright license

Creative Commons Attribution 4.0 International

23 May 2015

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April 2022 Public Data File from Crossref

copyright status

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describes a project that uses

object named as

DEseq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

massive parallel sequencing

1 reference

based on heuristic

inferred from title

Improved survival with T cell clonotype stability after anti-CTLA-4 treatment in cancer patients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

Immunologic characteristics of intrarenal T cells: trafficking of expanded CD8+ T cell β-chain clonotypes in progressive lupus nephritis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

Differential expression analysis for sequence count data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

Ribosomal P autoantibodies are present before SLE onset and are directed against non-C-terminal peptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

Comprehensive assessment of T-cell receptor beta-chain diversity in alphabeta T cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

IMGT, the international ImMunoGeneTics information system.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

Amino Acid Similarity Accounts for T Cell Cross-Reactivity and for “Holes” in the T Cell Repertoire

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

Direct measurement of T-cell receptor repertoire diversity with AmpliCot

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

Mechanisms of Autoantibody Diversification to SLE‐Related Autoantigens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

Major Peptide Autoepitopes for Nucleosome‐Centered T and B Cell Interaction in Human and Murine Lupus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

CD4 positive peripheral T cells from patients with systemic lupus erythematosus (SLE) are clonally expanded.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

Prediction of short term mortality in systemic lupus erythematosus with time dependent measures of disease activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

Enhanced lymphoproliferation and diminished autoimmunity in CD4-deficient MRL/lpr mice.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

A Shannon entropy analysis of immunoglobulin and T cell receptor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

Updating the American College of Rheumatology revised criteria for the classification of systemic lupus erythematosus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

T helper cells driving pathogenic anti-DNA autoantibody production in lupus: nucleosomal epitopes and CD40 ligand signals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

Restrictions of T cell receptor beta chain repertoire in the peripheral blood of patients with systemic lupus erythematosus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

Structure and specificity of T cell receptors expressed by potentially pathogenic anti-DNA autoantibody-inducing T cells in human lupus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

The 1982 revised criteria for the classification of systemic lupus erythematosus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

Pathologic features of gastrointestinal tract lesions in childhood-onset systemic lupus erythematosus: study of 26 patients, with review of the literature

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

T cell receptor alpha/beta expressing double-negative (CD4-/CD8-) and CD4+ T helper cells in humans augment the production of pathogenic anti-DNA autoantibodies associated with lupus nephritis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

Anti-DNA antibodies from autoimmune mice arise by clonal expansion and somatic mutation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

Evidence for early onset, polyclonal activation of T cell subsets in mice homozygous for lpr

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

27 July 2018

Capturing needles in haystacks: a comparison of B-cell receptor sequencing methods.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

25 September 2018

A distinct evolution of the T-cell repertoire categorizes treatment refractory gastrointestinal acute graft-versus-host disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

25 September 2018

Ecological analysis of antigen-specific CTL repertoires defines the relationship between naive and immune T-cell populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

25 September 2018

Deep sequencing of antiviral T-cell responses to HCMV and EBV in humans reveals a stable repertoire that is maintained for many years.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

25 September 2018

Determinants of public T cell responses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

25 September 2018

A single autoimmune T cell receptor recognizes more than a million different peptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

25 September 2018

60 kD Ro and nRNP A frequently initiate human lupus autoimmunity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

25 September 2018

Identification of systemically expanded activated T cell clones in MRL/lpr and NZB/W F1 lupus model mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

25 September 2018

Activation of diverse repertoires of autoreactive T cells enhances the loss of anti-dsDNA B cell tolerance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

25 September 2018

Restricted junctional diversity of T cell receptor delta gene rearrangements expressed in systemic lupus erythematosus (SLE) patients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

25 September 2018

In vivo persistence of expanded clones specific for bacterial antigens within the human T cell receptor alpha/beta CD4-8- subset

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

25 September 2018

Murine lupus in MRL/lpr mice lacking CD4 or CD8 T cells.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4458014

25 September 2018

Cellular mechanism of DNA-specific antibody synthesis by lymphocytes from systemic lupus erythematosus patients

1 reference

https://api.crossref.org/works/10.1186%2FS13075-015-0655-9

21 January 2018

Inflamed target tissue provides a specific niche for highly expanded T-cell clones in early human autoimmune disease

1 reference

https://api.crossref.org/works/10.1186%2FS13075-015-0655-9

21 January 2018

Analysis of accumulated T cell clonotypes in patients with systemic lupus erythematosus

1 reference

https://pubmed.ncbi.nlm.nih.gov/26001779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

T cell receptor repertoire of T cells in the kidneys of patients with lupus nephritis

1 reference

https://pubmed.ncbi.nlm.nih.gov/26001779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Development of Autoantibodies before the Clinical Onset of Systemic Lupus Erythematosus

1 reference

https://pubmed.ncbi.nlm.nih.gov/26001779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Correlation of clonal T cell expansion with disease activity in systemic lupus erythematosus

1 reference

https://pubmed.ncbi.nlm.nih.gov/26001779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of human T cell and B cell responses against U small nuclear ribonucleoprotein 70-kd, B, and D polypeptides among patients with systemic lupus erythematosus and mixed connective tissue disease

1 reference

https://pubmed.ncbi.nlm.nih.gov/26001779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Detection of restricted junctional diversity of peripheral T cells in SLE patients by spectratyping

1 reference

https://pubmed.ncbi.nlm.nih.gov/26001779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

T cell receptor clonotypes in skin lesions from patients with systemic lupus erythematosus

1 reference

https://pubmed.ncbi.nlm.nih.gov/26001779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SLE nephritis is associated with an oligoclonal expansion of intrarenal T cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/26001779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

T-cell receptor Vbeta gene expression in experimental lupus nephritis

1 reference

https://pubmed.ncbi.nlm.nih.gov/26001779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the interindividual conservation of T cell receptor alpha- and beta-chain variable regions gene in the peripheral blood of patients with systemic lupus erythematosus

1 reference

https://pubmed.ncbi.nlm.nih.gov/26001779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inverse correlation between steady‐state RNA and cell surface T cell receptor levels

1 reference

https://pubmed.ncbi.nlm.nih.gov/26001779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Detection and epitope analysis of autoantigen-reactive T cells to the U1-small nuclear ribonucleoprotein A protein in autoimmune disease patients

1 reference

https://pubmed.ncbi.nlm.nih.gov/26001779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Clonal predominance of T cell receptors within the CD8+ CD45RO+ subset in normal human subjects

1 reference

https://pubmed.ncbi.nlm.nih.gov/26001779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for polyclonal T cell activation in murine models of systemic lupus erythematosus

1 reference

https://pubmed.ncbi.nlm.nih.gov/26001779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Administration of monoclonal anti-T cell antibodies retards murine lupus in BXSB mice

1 reference

https://pubmed.ncbi.nlm.nih.gov/26001779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S13075-015-0655-9

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

ResearchGate publication ID

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