(Q35721159)

9 August 2017

title

Reduced mRNA secondary-structure stability near the start codon indicates functional genes in prokaryotes (English)

1 reference

9 August 2017

0 references

4

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9 August 2017

Thomas E Keller

1

1 reference

9 August 2017

S David Mis

series ordinal

2

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9 August 2017

Kevin E Jia

series ordinal

3

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9 August 2017

publication date

2 December 2011

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Genome Biology and Evolution

9 August 2017

published in

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9 August 2017

volume

4

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9 August 2017

issue

2

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9 August 2017

page(s)

80-88

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Understanding the contribution of synonymous mutations to human disease

9 August 2017

cites work

1 reference

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12 July 2018

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Reduced stability of mRNA secondary structure near the translation-initiation site in dsDNA viruses

12 July 2018

1 reference

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Synonymous but not the same: the causes and consequences of codon bias

12 July 2018

1 reference

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Differential arginylation of actin isoforms is regulated by coding sequence-dependent degradation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269970

A universal trend of reduced mRNA stability near the translation-initiation site in prokaryotes and eukaryotes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269970

Translation efficiency is determined by both codon bias and folding energy

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269970

General quantitative genetic methods for comparative biology: phylogenies, taxonomies and multi-trait models for continuous and categorical characters

12 July 2018

1 reference

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Design parameters to control synthetic gene expression in Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269970

Coding-sequence determinants of gene expression in Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269970

Biopython: freely available Python tools for computational molecular biology and bioinformatics

12 July 2018

1 reference

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Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269970

A "silent" polymorphism in the MDR1 gene changes substrate specificity

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269970

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269970

Hearing silence: non-neutral evolution at synonymous sites in mammals

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269970

The Phylogenetic Mixed Model

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269970

APE: Analyses of Phylogenetics and Evolution in R language

12 July 2018

1 reference

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The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269970

Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach

12 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269970

12 July 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269970

The complete genome sequence of Escherichia coli K-12

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269970

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269970

Determinant of cistron specificity in bacterial ribosomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269970

Mutational robustness of ribosomal protein genes.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269970

Multifactorial Determinants of Protein Expression in Prokaryotic Open Reading Frames

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269970

Inferring parameters shaping amino acid usage in prokaryotic genomes via Bayesian MCMC methods

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269970

A theoretical limit to coding space in chromosomes of bacteria.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269970

Cython: The Best of Both Worlds

25 September 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR129

Phylogenies and the Comparative Method

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR129

Fast folding and comparison of RNA secondary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR129

METHODS FOR THE ANALYSIS OF COMPARATIVE DATA IN EVOLUTIONARY BIOLOGY.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR129

21 January 2018

Identifiers

DOI

10.1093/GBE/EVR129

1 reference

9 August 2017

1 reference

9 August 2017

1 reference