(Q35737507)

10 August 2017

title

Distinct p53 genomic binding patterns in normal and cancer-derived human cells (English)

1 reference

10 August 2017

3

1 reference

10 August 2017

Krassimira Botcheva

1

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10 August 2017

Sean R McCorkle

series ordinal

2

1 reference

10 August 2017

John J Dunn

series ordinal

4

1 reference

10 August 2017

Carl W Anderson

series ordinal

5

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10 August 2017

language of work or name

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15 December 2011

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10 August 2017

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10 August 2017

volume

10

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10 August 2017

issue

24

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10 August 2017

page(s)

4237-4249

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describes a project that uses

10 August 2017

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC3272258

inferred from PubMed Central ID database lookup

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The Toll-like receptor gene family is integrated into human DNA damage and p53 networks.

12 July 2018

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12 July 2018

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Role of p53 serine 46 in p53 target gene regulation

12 July 2018

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SPATA18, a spermatogenesis-associated gene, is a novel transcriptional target of p53 and p63

12 July 2018

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Possible existence of lysosome-like organella within mitochondria and its role in mitochondrial quality control

12 July 2018

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Impact of Alu repeats on the evolution of human p53 binding sites

12 July 2018

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Formation of stress-specific p53 binding patterns is influenced by chromatin but not by modulation of p53 binding affinity to response elements

12 July 2018

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Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs

12 July 2018

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apoB and apobec1, two genes key to lipid metabolism, are transcriptionally regulated by p53.

12 July 2018

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Orphan CpG islands identify numerous conserved promoters in the mammalian genome

12 July 2018

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Transcription factor binding variation in the evolution of gene regulation

12 July 2018

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p53 binds preferentially to genomic regions with high DNA-encoded nucleosome occupancy

12 July 2018

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A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response

12 July 2018

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miR-192/miR-215 influence 5-fluorouracil resistance through cell cycle-mediated mechanisms complementary to its post-transcriptional thymidilate synthase regulation.

12 July 2018

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p53 functions and cell lines: have we learned the lessons from the past?

12 July 2018

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The interaction of p53 with 3'-terminal mismatched DNA.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

High nucleosome occupancy is encoded at human regulatory sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Examination of the expanding pathways for the regulation of p21 expression and activity

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

DNA methylation increases nucleosome compaction and rigidity

12 July 2018

1 reference

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Differential regulation of p53 target genes: it's (core promoter) elementary.

12 July 2018

1 reference

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Regulation of the p53 transcriptional response by structurally diverse core promoters

12 July 2018

1 reference

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p53 Pre- and post-binding event theories revisited: stresses reveal specific and dynamic p53-binding patterns on the p21 gene promoter

12 July 2018

1 reference

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Human DNA methylomes at base resolution show widespread epigenomic differences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

The first 30 years of p53: growing ever more complex

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

ChIP-seq: advantages and challenges of a maturing technology

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Redefining the p53 response element

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling

12 July 2018

1 reference

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12 July 2018

Modes of p53 regulation

1 reference

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Blinded by the Light: The Growing Complexity of p53

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

The p53HMM algorithm: using profile hidden markov models to detect p53-responsive genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

CpG islands--'a rough guide'.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Effects of CpG methylation on recognition of DNA by the tumour suppressor p53.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Noncanonical DNA motifs as transactivation targets by wild type and mutant p53

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Alu element-mediated gene silencing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Characterization of genome-wide p53-binding sites upon stress response.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

The RNA polymerase II core promoter - the gateway to transcription.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Transcriptional control of human p53-regulated genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Killin is a p53-regulated nuclear inhibitor of DNA synthesis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

p53 regulates maternal reproduction through LIF

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Critical DNA binding interactions of the insulator protein CTCF: a small number of zinc fingers mediate strong binding, and a single finger-DNA interaction controls binding at imprinted loci

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Regulation of H-ras splice variant expression by cross talk between the p53 and nonsense-mediated mRNA decay pathways.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Divergent evolution of human p53 binding sites: cell cycle versus apoptosis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

p53 targets identified by protein expression profiling

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

The epigenomics of cancer

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

An integrated map of p53-binding sites and histone modification in the human ENCODE regions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Functional analysis of p53 binding under differential stresses

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

The versatile interactions of p53 with DNA: when flexibility serves specificity

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Regulation of the human p21(waf1/cip1) gene promoter via multiple binding sites for p53 and the vitamin D3 receptor.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

A global map of p53 transcription-factor binding sites in the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Chromatin immunoprecipitation-based screen to identify functional genomic binding sites for sequence-specific transactivators

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Identification of the mismatch repair genes PMS2 and MLH1 as p53 target genes by using serial analysis of binding elements

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

The nuclear lamina comes of age.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

A highly conserved proapoptotic gene, IKIP, located next to the APAF1 gene locus, is regulated by p53

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Cytoplasmic foci are sites of mRNA decay in human cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

An abundance of bidirectional promoters in the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

The p53MH algorithm and its application in detecting p53-responsive genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Human smooth muscle alpha-actin gene is a transcriptional target of the p53 tumor suppressor protein

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Inhibition of mouse thymidylate synthase promoter activity by the wild-type p53 tumor suppressor protein

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

A transcriptionally active DNA-binding site for human p53 protein complexes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Definition of a consensus binding site for p53

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Characterization of a new human diploid cell strain, IMR-90.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Life or death: p53-induced apoptosis requires DNA binding cooperativity.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

DNA methylation inhibits p53-mediated survivin repression.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Chromatin immunoprecipitation-on-chip reveals stress-dependent p53 occupancy in primary normal cells but not in established cell lines.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Algorithm for prediction of tumour suppressor p53 affinity for binding sites in DNA.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Cooperative binding of tetrameric p53 to DNA.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

p21B, a variant of p21(Waf1/Cip1), is induced by the p53 family

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272258

Methylation and deamination of CpGs generate p53-binding sites on a genomic scale

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22127205

12 December 2020

inferred from PubMed ID database lookup

Site-specific DNA methylation in the neurofibromatosis (NF1) promoter interferes with binding of CREB and SP1 transcription factors

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22127205

12 December 2020

inferred from PubMed ID database lookup

Stem cell biology meets p53

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22127205

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.4161/CC.10.24.18383

1 reference

10 August 2017

1 reference

10 August 2017

1 reference