(Q28306149)

10

object named as

Mark B Gerstein

0 references

Michael P. Snyder

12

object named as

Michael Snyder

0 references

author name string

Ghia M Euskirchen

1

0 references

Chia-Lin Wei

3

0 references

Wah Heng Lee

4

0 references

Zhengdong D Zhang

5

0 references

Stephen Hartman

6

0 references

Olof Emanuelsson

7

0 references

Viktor Stolc

8

0 references

Sherman Weissman

9

0 references

Yijun Ruan

describes a project that uses

11

0 references

language of work or name

English

0 references

publication date

June 2007

0 references

published in

Genome Research

0 references

volume

17

0 references

page(s)

898-909

0 references

issue

6

0 references

ImageJ

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC1891348/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

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Control of developmental regulators by Polycomb in human embryonic stem cells

20 March 2017

1 reference

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GENE SEQUENCING: The Race for the $1000 Genome

20 March 2017

1 reference

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High-resolution mapping of DNA copy alterations in human chromosome 22 using high-density tiling oligonucleotide arrays

20 March 2017

1 reference

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Core transcriptional regulatory circuitry in human embryonic stem cells

20 March 2017

1 reference

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Accurate multiplex polony sequencing of an evolved bacterial genome

20 March 2017

1 reference

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Genome sequencing in microfabricated high-density picolitre reactors

20 March 2017

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Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment

20 March 2017

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Identification of the mismatch repair genes PMS2 and MLH1 as p53 target genes by using serial analysis of binding elements

20 March 2017

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Control of pancreas and liver gene expression by HNF transcription factors

20 March 2017

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Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

20 March 2017

1 reference

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The transcriptional activity of human Chromosome 22

20 March 2017

1 reference

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Gene expression analysis using oligonucleotide arrays produced by maskless photolithography

20 March 2017

1 reference

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E2F integrates cell cycle progression with DNA repair, replication, and G(2)/M checkpoints

20 March 2017

1 reference

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Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis

20 March 2017

1 reference

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Use of chromatin immunoprecipitation to clone novel E2F target promoters

20 March 2017

1 reference

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The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

20 March 2017

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The ENCODE (ENCyclopedia Of DNA Elements) Project

20 March 2017

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Stats: transcriptional control and biological impact

7 April 2017

1 reference

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A global map of p53 transcription-factor binding sites in the human genome

7 April 2017

1 reference

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A high-resolution map of active promoters in the human genome

7 April 2017

1 reference

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Cellular responses to interferon-gamma

7 April 2017

1 reference

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Use of a cDNA microarray to analyse gene expression patterns in human cancer

7 April 2017

1 reference

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ChIP-chip comes of age for genome-wide functional analysis

7 April 2017

1 reference

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Design optimization methods for genomic DNA tiling arrays

29 September 2017

1 reference

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Global changes in STAT target selection and transcription regulation upon interferon treatments

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891348

Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891348

Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891348

Defining the CREB regulon: a genome-wide analysis of transcription factor regulatory regions.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891348

Applied bioinformatics for the identification of regulatory elements

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891348

CREB binds to multiple loci on human chromosome 22.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891348

ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891348

Probing chromatin immunoprecipitates with CpG-island microarrays to identify genomic sites occupied by DNA-binding proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891348

A Chromatin Immunoprecipitation Screen Reveals Protein Kinase Cβ as a Direct RUNX1 Target Gene

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891348

Distribution of NF-kappaB-binding sites across human chromosome 22

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891348

An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891348

GATA-1 binding sites mapped in the beta-globin locus by using mammalian chIp-chip analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891348

STAT proteins: signal tranducers and activators of transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891348

BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891348

A concise guide to cDNA microarray analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891348

The value of prior knowledge in discovering motifs with MEME.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891348