(Q35755784)

10 August 2017

title

Increasing Nucleosome Occupancy Is Correlated with an Increasing Mutation Rate so Long as DNA Repair Machinery Is Intact (English)

1 reference

10 August 2017

Puya G Yazdi

1

1 reference

10 August 2017

Brian A Pedersen

2

1 reference

10 August 2017

Jared F Taylor

3

1 reference

10 August 2017

Omar S Khattab

4

1 reference

10 August 2017

Yu-Han Chen

5

1 reference

10 August 2017

Yumay Chen

6

1 reference

10 August 2017

Steven E Jacobsen

7

1 reference

10 August 2017

Ping H Wang

8

1 reference

10 August 2017

language of work or name

English

0 references

publication date

26 August 2015

1 reference

10 August 2017

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10 August 2017

volume

10

1 reference

10 August 2017

issue

8

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10 August 2017

page(s)

e0136574

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Creative Commons Attribution 4.0 International

10 August 2017

copyright license

start time

26 August 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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2 October 2017

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2 October 2017

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2 October 2017

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2 October 2017

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DNA replication timing and long-range DNA interactions predict mutational landscapes of cancer genomes

2 October 2017

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2 October 2017

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2 October 2017

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2 October 2017

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2 October 2017

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Determinants of nucleosome organization in primary human cells

2 October 2017

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2 October 2017

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2 October 2017

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Impact of chromatin structure on sequence variability in the human genome

2 October 2017

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2 October 2017

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Widespread compensatory evolution conserves DNA-encoded nucleosome organization in yeast

2 October 2017

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2 October 2017

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2 October 2017

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2 October 2017

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2 October 2017

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Rate, molecular spectrum, and consequences of human mutation

2 October 2017

1 reference

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2 October 2017

1 reference

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Human DNA methylomes at base resolution show widespread epigenomic differences

2 October 2017

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2 October 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

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2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

The DNA-encoded nucleosome organization of a eukaryotic genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

Oxidatively generated damage to the guanine moiety of DNA: mechanistic aspects and formation in cells

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

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2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

Dynamic regulation of nucleosome positioning in the human genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

Functional characterization of pathogenic human MSH2 missense mutations in Saccharomyces cerevisiae.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

A genomic code for nucleosome positioning

2 October 2017

1 reference

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2 October 2017

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2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

Structural studies of a stable parallel-stranded DNA duplex incorporating isoguanine:cytosine and isocytosine:guanine basepairs by nuclear magnetic resonance spectroscopy

2 October 2017

1 reference

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Crystal structure of the nucleosome core particle at 2.8 A resolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

The rate of hydrolytic deamination of 5-methylcytosine in double-stranded DNA

2 October 2017

1 reference

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Characterization of base-pair opening in deoxynucleotide duplexes using catalyzed exchange of the imino proton

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

Genome-wide nucleosome specificity and directionality of chromatin remodelers.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

A map of nucleosome positions in yeast at base-pair resolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

Relationship between nucleosome positioning and DNA methylation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

Nucleosomes are well positioned in exons and carry characteristic histone modifications

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

DNA melting investigated by differential scanning calorimetry and Raman spectroscopy

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

Formation of 2-hydroxydeoxyadenosine triphosphate, an oxidatively damaged nucleotide, and its incorporation by DNA polymerases. Steady-state kinetics of the incorporation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

8-Hydroxyguanine, an abundant form of oxidative DNA damage, causes G-T and A-C substitutions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

DANPOS: dynamic analysis of nucleosome position and occupancy by sequencing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

Nucleosomes are preferentially positioned at exons in somatic and sperm cells

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

RSC mobilizes nucleosomes to improve accessibility of repair machinery to the damaged chromatin

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4550472

Nucleosomes suppress spontaneous mutations base-specifically in eukaryotes

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26308346

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0136574

1 reference

10 August 2017

0 references

1 reference

10 August 2017

1 reference