(Q35759706)

10 August 2017

title

Performance of the translational apparatus varies with the ecological strategies of bacteria (English)

1 reference

10 August 2017

Les Dethlefsen

1

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Thomas M. Schmidt

object named as

Thomas M Schmidt

series ordinal

2

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language of work or name

English

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publication date

2 February 2007

1 reference

10 August 2017

published in

Journal of Bacteriology

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10 August 2017

volume

189

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10 August 2017

issue

8

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10 August 2017

page(s)

3237-3245

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describes a project that uses

10 August 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC1855866/fullTextXML

inferred from PubMed Central ID database lookup

maintained by WikiProject

1 reference

Responses to Stress and Nutrient Availability by the Marine Ultramicrobacterium Sphingomonas sp. Strain RB2256

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2 October 2017

1 reference

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Variation in the strength of selected codon usage bias among bacteria

2 October 2017

1 reference

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Differences in codon bias cannot explain differences in translational power among microbes

2 October 2017

1 reference

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Life history implications of rRNA gene copy number in Escherichia coli

2 October 2017

1 reference

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Codon usage between genomes is constrained by genome-wide mutational processes

2 October 2017

1 reference

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2 October 2017

1 reference

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2 October 2017

1 reference

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2 October 2017

1 reference

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Analysis of codon:anticodon interactions within the ribosome provides new insights into codon reading and the genetic code structure

2 October 2017

1 reference

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CMEIAS: A Computer-Aided System for the Image Analysis of Bacterial Morphotypes in Microbial Communities

2 October 2017

1 reference

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Specific growth rate plays a critical role in hydrogen peroxide resistance of the marine oligotrophic ultramicrobacterium sphingomonas alaskensis strain RB2256.

2 October 2017

1 reference

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2 October 2017

1 reference

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rRNA operon copy number reflects ecological strategies of bacteria

2 October 2017

1 reference

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Inferring the historical patterns of biological evolution

2 October 2017

1 reference

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Implications of rRNA operon copy number and ribosome content in the marine oligotrophic ultramicrobacterium Sphingomonas sp. strain RB2256.

2 October 2017

1 reference

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Effect of temperature on in vivo protein synthetic capacity in Escherichia coli

2 October 2017

1 reference

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Growth rate-dependent accumulation of RNA from plasmid-borne rRNA operons in Escherichia coli

2 October 2017

1 reference

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Ribosome release factor RF4 and termination factor RF3 are involved in dissociation of peptidyl-tRNA from the ribosome

2 October 2017

1 reference

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Fast recycling of Escherichia coli ribosomes requires both ribosome recycling factor (RRF) and release factor RF3

2 October 2017

1 reference

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Escherichia coli proteins synthesized during recovery from starvation

2 October 2017

1 reference

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Dissociation rates of peptidyl-tRNA from the P-site of E.coli ribosomes.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855866

Codon usage: mutational bias, translational selection, or both?

2 October 2017

1 reference

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Use of fluorochromes for direct enumeration of total bacteria in environmental samples: past and present

2 October 2017

1 reference

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Energetics of bacterial growth: balance of anabolic and catabolic reactions.

2 October 2017

1 reference

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rRNA operon multiplicity in Escherichia coli and the physiological implications of rrn inactivation

2 October 2017

1 reference

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Statistical analysis of the direct count method for enumerating bacteria

2 October 2017

1 reference

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Macromolecular Composition During Steady-State Growth of Escherichia coli B/r

2 October 2017

1 reference

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Constraints on the accuracy of messenger RNA movement

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855866

Starvation proteins in Escherichia coli: kinetics of synthesis and role in starvation survival

2 October 2017

1 reference

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Codon preferences in free-living microorganisms

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855866

The 'effective number of codons' used in a gene

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855866

Growth rate of Escherichia coli

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855866

Responses to multiple-nutrient starvation in marine Vibrio sp. strain CCUG 15956

2 October 2017

1 reference

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Regulation of ribosome production in Escherichia coli: Synthesis and stability of ribosomal RNA and of ribosomal protein messenger RNA at different growth rates

2 October 2017

1 reference

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Synthesis and degradation of termination and premature-termination fragments of β-galactosidase in vitro and in vivo

2 October 2017

1 reference

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The concentrations of stable RNA and ribosomes in Rickettsia prowazekii

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855866

Escherichia coli ribosomes translate in vivo with variable rate

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855866

In vivo assay of protein synthesizing capacity of Escherichia coli from slowly growing chemostat cultures

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855866

Suboptimal growth with hyper-accurate ribosomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855866

Rates of aminoacyl-tRNA selection at 29 sense codons in vivo.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855866

Processivity errors of gene expression in Escherichia coli.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855866

Is there a unique ribosome phenotype for naturally occurring Escherichia coli?

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855866

Peptidyl transfer RNA dissociates during protein synthesis from ribosomes of Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855866

Dependency on medium and temperature of cell size and chemical composition during balanced grown of Salmonella typhimurium

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855866

Accounting for background nucleotide composition when measuring codon usage bias.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855866

Synonymous codon usage in Pseudomonas aeruginosa PA01.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855866

The Comprehensive Microbial Resource.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855866

Absence of translationally selected synonymous codon usage bias in Helicobacter pylori.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855866

Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855866

Growth-optimizing accuracy of gene expression

25 September 2018

1 reference

12 December 2020

Selection of laboratory wild-type phenotype from natural isolates of Escherichia coli in chemostats

1 reference

12 December 2020

Growth rate control of protein and nucleic acid content in Streptomyces coelicolor A3(2) and Escherichia coli B/r

1 reference

12 December 2020

Ribosome mutants with altered accuracy translate with reduced processivity

1 reference

12 December 2020

Costs of accuracy determined by a maximal growth rate constraint

1 reference

12 December 2020

The inefficiency of ribosomes functioning in Escherichia coli growing at moderate rates

1 reference

12 December 2020

Identifiers

DOI

10.1128/JB.01686-06

1 reference

10 August 2017

1 reference

10 August 2017

1 reference