(Q35770008)

10 August 2017

title

Protein folding is mechanistically robust (English)

1 reference

10 August 2017

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2

Vijay S Pande

1 reference

10 August 2017

Jeffrey K Weber

1

1 reference

10 August 2017

language of work or name

English

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publication date

21 February 2012

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10 August 2017

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10 August 2017

volume

102

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10 August 2017

issue

4

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10 August 2017

page(s)

859-867

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How robust are protein folding simulations with respect to force field parameterization?

10 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283819

Atomistic folding simulations of the five-helix bundle protein λ(6−85).

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283819

Everything you wanted to know about Markov State Models but were afraid to ask

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283819

Protein folded states are kinetic hubs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283819

Molecular simulation of ab initio protein folding for a millisecond folder NTL9(1-39)

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283819

Rapid equilibrium sampling initiated from nonequilibrium data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283819

Reactive flux and folding pathways in network models of coarse-grained protein dynamics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283819

Mapping the conformational transition in Src activation by cumulating the information from multiple molecular dynamics trajectories

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283819

Sloppiness, robustness, and evolvability in systems biology

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283819

Ten-microsecond molecular dynamics simulation of a fast-folding WW domain

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283819

Universally sloppy parameter sensitivities in systems biology models

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283819

The dynamic energy landscape of dihydrofolate reductase catalysis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283819

Principles of protein folding, misfolding and aggregation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283819

Mapping the folding pathway of an immunoglobulin domain: structural detail from Phi value analysis and movement of the transition state

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283819

Robustness of protein folding kinetics to surface hydrophobic substitutions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283819

Markov models of molecular kinetics: generation and validation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283819

Probability distributions of molecular observables computed from Markov models.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283819

Sloppy-model universality class and the Vandermonde matrix.

25 September 2018

1 reference

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Error analysis and efficient sampling in Markovian state models for molecular dynamics.

25 September 2018

1 reference

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The folding of spectrin domains II: phi-value analysis of R16.

25 September 2018

1 reference

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Two-state allosteric behavior in a single-domain signaling protein

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22385857

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Improved Gō-like models demonstrate the robustness of protein folding mechanisms towards non-native interactions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22385857

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Exploring the energy surface of protein folding by structure-reactivity relationships and engineered proteins: observation of Hammond behavior for the gross structure of the transition state and anti-Hammond behavior for structural elements for unfo

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22385857

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.BPJ.2012.01.028

1 reference

10 August 2017

1 reference

10 August 2017

1 reference