(Q35773591)

10 August 2017

title

Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning (English)

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10 August 2017

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4

Dirk Gevers

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10 August 2017

7

Eric J Alm

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10 August 2017

Brian Cleary

1

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10 August 2017

Ilana Lauren Brito

2

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10 August 2017

Katherine Huang

3

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10 August 2017

Terrance Shea

5

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10 August 2017

Sarah Young

6

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10 August 2017

publication date

14 September 2015

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10 August 2017

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10 August 2017

volume

33

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10 August 2017

issue

10

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10 August 2017

page(s)

1053-1060

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https://scigraph.springernature.com/pub.10.1038/nbt.3329

10 August 2017

exact match

0 references

cites work

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

GroopM: an automated tool for the recovery of population genomes from related metagenomes.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Tackling soil diversity with the assembly of large, complex metagenomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Ray Meta: scalable de novo metagenome assembly and profiling.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Scaling metagenome sequence assembly with probabilistic de Bruijn graphs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Metagenomics - a guide from sampling to data analysis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Enterotypes of the human gut microbiome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

The NIH Human Microbiome Project

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Genome assembly reborn: recent computational challenges

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

A simple, fast, and accurate method of phylogenomic inference

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

27 July 2018

The metagenomics of soil

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Comparative metagenomics of microbial communities

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Binning metagenomic contigs by coverage and composition

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Global biogeography of highly diverse protistan communities in soil

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Meta-IDBA: a de Novo assembler for metagenomic data

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Redefining the role of intestinal microbes in the pathogenesis of necrotizing enterocolitis

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

A genomic distance based on MUM indicates discontinuity between most bacterial species and genera.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Mapping short DNA sequencing reads and calling variants using mapping quality scores

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Computational improvements reveal great bacterial diversity and high metal toxicity in soil

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4720164

Indexing by latent semantic analysis

25 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT.3329

MetAMOS: a metagenomic assembly and analysis pipeline for AMOS.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT.3329

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NBT.3329

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10 August 2017

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10 August 2017

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