(Q35791561)

English

Analysis of Arabidopsis genome-wide variations before and after meiosis and meiotic recombination by resequencing Landsberg erecta and all four products of a single meiosis

scientific article published on 21 November 2011

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scholarly article

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17 January 2020

Analysis of Arabidopsis genome-wide variations before and after meiosis and meiotic recombination by resequencing Landsberg erecta and all four products of a single meiosis (English)

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17 January 2020

2

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17 January 2020

author name string

Pingli Lu

1

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17 January 2020

Ji Qi

3

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17 January 2020

Jiange Yang

4

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17 January 2020

Asela J Wijeratne

5

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17 January 2020

Tao Li

6

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17 January 2020

Hong Ma

7

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17 January 2020

publication date

21 November 2011

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17 January 2020

Genome Research

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17 January 2020

22

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17 January 2020

3

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17 January 2020

508-518

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17 January 2020

Reference-guided assembly of four diverse Arabidopsis thaliana genomes

1 reference

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Subspecific origin and haplotype diversity in the laboratory mouse

1 reference

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27 July 2018

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

1 reference

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Ancestral polyploidy in seed plants and angiosperms

1 reference

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27 July 2018

Identification of copy number variation hotspots in human populations

1 reference

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27 July 2018

De novo rates and selection of large copy number variation

1 reference

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27 July 2018

A SNP associated with alternative splicing of RPT5b causes unequal redundancy between RPT5a and RPT5b among Arabidopsis thaliana natural variation

1 reference

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27 July 2018

Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana.

1 reference

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agriGO: a GO analysis toolkit for the agricultural community

1 reference

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The flowering gene SINGLE FLOWER TRUSS drives heterosis for yield in tomato

1 reference

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27 July 2018

The scale of population structure in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Natural variation for seed dormancy in Arabidopsis is regulated by additive genetic and molecular pathways

1 reference

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27 July 2018

PRDM9 is a major determinant of meiotic recombination hotspots in humans and mice

1 reference

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27 July 2018

inGAP: an integrated next-generation genome analysis pipeline

1 reference

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27 July 2018

Characterization of meiotic crossovers and gene conversion by whole-genome sequencing in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Integrating the genetic and physical maps of Arabidopsis thaliana: identification of mapped alleles of cloned essential (EMB) genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Copy number variation in human health, disease, and evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Sequencing of natural strains of Arabidopsis thaliana with short reads

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

High-resolution mapping of meiotic crossovers and non-crossovers in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Mapping and sequencing of structural variation from eight human genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

The functional impact of structural variation in humans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Recognition of the Hyaloperonospora parasitica effector ATR13 triggers resistance against oomycete, bacterial, and viral pathogens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

ASY1 mediates AtDMC1-dependent interhomolog recombination during meiosis in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

PAML 4: phylogenetic analysis by maximum likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Pollen tetrad-based visual assay for meiotic recombination in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

The road to crossovers: plants have their say.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

A high-resolution map of segmental DNA copy number variation in the mouse genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Genetic mechanisms and evolutionary significance of natural variation in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

The Arabidopsis thaliana PARTING DANCERS gene encoding a novel protein is required for normal meiotic homologous recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Variation in crossing-over rates across chromosome 4 of Arabidopsis thaliana reveals the presence of meiotic recombination "hot spots".

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

The pattern of polymorphism in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

The Arabidopsis MutS homolog AtMSH4 functions at an early step in recombination: evidence for two classes of recombination in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Naturally occurring genetic variation in Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Where the crossovers are: recombination distributions in mammals.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

The Mus81 solution to resolution: generating meiotic crossovers without Holliday junctions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

The origin of new genes: glimpses from the young and old

1 reference

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27 July 2018

Evolutionary dynamics of an Arabidopsis insect resistance quantitative trait locus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Attenuation of FLOWERING LOCUS C activity as a mechanism for the evolution of summer-annual flowering behavior in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

SNOMAD (Standardization and NOrmalization of MicroArray Data): web-accessible gene expression data analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Crossover interference in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Genome architecture, rearrangements and genomic disorders

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Mechanism and control of meiotic recombination initiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

1 reference

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27 July 2018

Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time.

1 reference

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27 July 2018

Meiotic chromosomes: integrating structure and function

1 reference

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27 July 2018

Alignment of whole genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Crossing over analysis at pachytene in man.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Male mice defective in the DNA mismatch repair gene PMS2 exhibit abnormal chromosome synapsis in meiosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Meiotic chromosome behavior in spread preparations of yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

27 July 2018

Sisters dancing in meiosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

25 September 2018

Genome sequence comparison of Col and Ler lines reveals the dynamic nature of Arabidopsis chromosomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

25 September 2018

Mapping short DNA sequencing reads and calling variants using mapping quality scores

1 reference

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25 September 2018

Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster.

1 reference

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25 September 2018

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1 reference

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25 September 2018

The Arabidopsis ROCK-N-ROLLERS gene encodes a homolog of the yeast ATP-dependent DNA helicase MER3 and is required for normal meiotic crossover formation.

1 reference

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Dissection of floral induction pathways using global expression analysis.

1 reference

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25 September 2018

The Mus81/Mms4 Endonuclease Acts Independently of Double-Holliday Junction Resolution to Promote a Distinct Subset of Crossovers During Meiosis in Budding Yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

25 September 2018

Recombination and gene conversion in a 170-kb genomic region of Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3290786

25 September 2018

Natural variation in light sensitivity of Arabidopsis

1 reference

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25 September 2018

The many faces of mismatch repair in meiosis

1 reference

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25 September 2018

The A. thaliana disease resistance gene RPS2 encodes a protein containing a nucleotide-binding site and leucine-rich repeats

1 reference

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25 September 2018

Conversion-associated recombination in yeast (hybrids-meiosis-tetrads-marker loci-models).

1 reference

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25 September 2018

Chiasma formation in Arabidopsis thaliana accession Wassileskija and in two meiotic mutants

1 reference

https://pubmed.ncbi.nlm.nih.gov/22106370

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Covariation of synaptonemal complex length and mammalian meiotic exchange rates

1 reference

https://pubmed.ncbi.nlm.nih.gov/22106370

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/22106370

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tetrad analysis possible in Arabidopsis with mutation of the QUARTET (QRT) genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22106370

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Origins of mouse inbred strains deduced from whole-genome scanning by polymorphic microsatellite loci

1 reference

https://pubmed.ncbi.nlm.nih.gov/22106370

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1101/GR.127522.111

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22106370%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22106370%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22106370%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

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