(Q22122056)

6 February 2023

24

Jeremy Schmutz

Jeremy

Schmutz

1 reference

6 February 2023

9

Jane Grimwood

Jane

Grimwood

1 reference

6 February 2023

26

Yves Van de Peer

Yves

Van de Peer

1 reference

6 February 2023

18

Xi Wang

Xi

Wang

1 reference

6 February 2023

13

Stephan Ossowski

Stephan

Ossowski

1 reference

6 February 2023

Korbinian Schneeberger

16

object named as

Korbinian Schneeberger

Korbinian

Schneeberger

1 reference

6 February 2023

Ya-Long Guo

30

Ya-Long

Guo

1 reference

6 February 2023

Noah Fahlgren

7

Noah

Fahlgren

1 reference

6 February 2023

James C Carrington

22

James C

Carrington

1 reference

6 February 2023

Igor V Grigoriev

27

Igor V

Grigoriev

1 reference

6 February 2023

Jan-Fang Cheng

5

Jan-Fang

Cheng

1 reference

6 February 2023

23

Brandon S Gaut

Brandon S

Gaut

1 reference

6 February 2023

17

Manuel Spannagl

Manuel

Spannagl

1 reference

6 February 2023

10

Heidrun Gundlach

Heidrun

Gundlach

1 reference

6 February 2023

25

Klaus F X Mayer

Klaus F X

Mayer

1 reference

6 February 2023

28

Magnus Nordborg

Magnus

Nordborg

1 reference

6 February 2023

15

Asaf A Salamov

Asaf A

Salamov

1 reference

6 February 2023

11

Georg Haberer

Georg

Haberer

1 reference

6 February 2023

Tina T Hu

1

Tina T

Hu

1 reference

6 February 2023

Pedro Pattyn

2

Pedro

Pattyn

1 reference

6 February 2023

Erica G Bakker

3

Erica G

Bakker

1 reference

6 February 2023

Jun Cao

4

Jun

Cao

1 reference

6 February 2023

Richard M Clark

6

Richard M

Clark

1 reference

6 February 2023

Jeffrey A Fawcett

8

Jeffrey A

Fawcett

1 reference

6 February 2023

Jesse D Hollister

12

Jesse D

Hollister

1 reference

6 February 2023

Robert P Ottilar

14

Robert P

Ottilar

1 reference

6 February 2023

Liang Yang

19

Liang

Yang

1 reference

6 February 2023

Mikhail E Nasrallah

20

Mikhail E

Nasrallah

1 reference

6 February 2023

Joy Bergelson

21

Joy

Bergelson

1 reference

Transposed genes in Arabidopsis are often associated with flanking repeats

6 February 2023

language of work or name

English

0 references

publication date

May 2011

0 references

published in

Nature Genetics

0 references

volume

43

0 references

page(s)

476-81

0 references

issue

5

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

A high quality draft consensus sequence of the genome of a heterozygous grapevine variety

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Paired-end mapping reveals extensive structural variation in the human genome

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Principles of genome evolution in the Drosophila melanogaster species group

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

The evolution of mammalian gene families

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

The pattern of polymorphism in Arabidopsis thaliana

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

BLAT—The BLAST-Like Alignment Tool

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Evidence for DNA Loss as a Determinant of Genome Size

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

The Sorghum bicolor genome and the diversification of grasses

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Evolution of genes and genomes on the Drosophila phylogeny

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Initial sequence of the chimpanzee genome and comparison with the human genome

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Basic local alignment search tool

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Identification of common molecular subsequences

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

An efficient algorithm for large-scale detection of protein families

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Gene number expansion and contraction in vertebrate genomes with respect to invertebrate genomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

The large genome constraint hypothesis: evolution, ecology and phenotype

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Multiple alignment of DNA sequences with MAFFT

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

A unified classification system for eukaryotic transposable elements

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Origin and evolution of retroelements based upon their reverse transcriptase sequences

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

7 April 2017

inferred from DOI database lookup

7 January 2021

based on heuristic

Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Chromosomal inversions between human and chimpanzee lineages caused by retrotransposons

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

The Arabidopsis Information Resource (TAIR): gene structure and function annotation.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Smallest angiosperm genomes found in lentibulariaceae, with chromosomes of bacterial size

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Eukaryotic genome size databases

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Adaptive evolution in two large families of ubiquitin-ligase adapters in nematodes and plants

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Comparative genome analyses of Arabidopsis spp.: inferring chromosomal rearrangement events in the evolutionary history of A. thaliana

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Evolution of genome size in Brassicaceae

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Mechanisms of recent genome size variation in flowering plants

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Genome architecture catalyzes nonrecurrent chromosomal rearrangements

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Whole-genome sequence assembly for mammalian genomes: Arachne 2.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Building genomic profiles for uncovering segmental homology in the twilight zone

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Gross chromosome rearrangements mediated by transposable elements in Drosophila melanogaster

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

The paleontology of intergene retrotransposons of maize.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

High intrinsic rate of DNA loss in Drosophila.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Selection on major components of angiosperm genomes

30 May 2018

1 reference

The largest eukaryotic genome of them all?

21 January 2018

1 reference

The shrunken genome of Arabidopsis thaliana

21 January 2018

1 reference

Comparing the linkage maps of the close relatives Arabidopsis lyrata and A. thaliana

21 January 2018

1 reference

Genome evolution among cruciferous plants: a lecture from the comparison of the genetic maps of three diploid species--Capsella rubella, Arabidopsis lyrata subsp. petraea, and A. thaliana.

21 January 2018

1 reference

Chromosome arrangement and nuclear architecture but not centromeric sequences are conserved between Arabidopsis thaliana and Arabidopsis lyrata.

21 January 2018

1 reference

Strain-specific retrotransposon-mediated recombination in commercially used Aspergillus niger strain

21 January 2018

1 reference

The F-box gene family is expanded in herbaceous annual plants relative to woody perennial plants.

21 January 2018

1 reference

LTR_STRUC: a novel search and identification program for LTR retrotransposons

21 January 2018

1 reference

Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3083492

Rates and patterns of molecular evolution in inbred and outbred Arabidopsis

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21478890

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Evolutionary rates in partially self-fertilizing species

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21478890

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NG.807

1 reference

855438

0 references

855438

1 reference

1 reference

1 reference