(Q22065740)

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Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

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scholarly article

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Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice (English)

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Oryza australiensis

object named as

Oryza australiensis

1 reference

based on heuristic

inferred from title

whole genome duplication

1 reference

based on heuristic

inferred from title

12

object named as

Olivier Panaud

author given names

Olivier

author last names

Panaud

1 reference

7 February 2023

Nathalie Picault

object named as

Nathalie Picault

3

author given names

Nathalie

author last names

Picault

1 reference

7 February 2023

object named as

Rod A Wing

11

author given names

Rod A

author last names

Wing

1 reference

7 February 2023

object named as

Anne Roulin

4

author given names

Anne

author last names

Roulin

2 references

ORCID Public Data File 2021

7 February 2023

author name string

Benoit Piegu

1

author given names

Benoit

author last names

Piegu

1 reference

7 February 2023

Romain Guyot

2

author given names

Romain

author last names

Guyot

1 reference

7 February 2023

Abhijit Sanyal

5

author given names

Abhijit

author last names

Sanyal

1 reference

7 February 2023

Abhijit Saniyal

6

0 references

Hyeran Kim

7

author given names

Hyeran

author last names

Kim

1 reference

7 February 2023

Kristi Collura

8

author given names

Kristi

author last names

Collura

1 reference

7 February 2023

Darshan S Brar

9

author given names

Darshan S

author last names

Brar

1 reference

7 February 2023

Scott Jackson

10

author given names

Scott

author last names

Jackson

1 reference

7 February 2023

language of work or name

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publication date

October 2006

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Genome Research

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16

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1262-9

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10

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Phylogeny of rice genomes with emphasis on origins of allotetraploid species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

19 March 2017

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

19 March 2017

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

19 March 2017

MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

19 March 2017

Artemis: sequence visualization and annotation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

19 March 2017

EMBOSS: the European Molecular Biology Open Software Suite

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

19 March 2017

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

19 March 2017

Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

19 March 2017

SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

7 April 2017

The map-based sequence of the rice genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

7 April 2017

The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

12 September 2017

The genetic organization of chromosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

12 September 2017

A movable feast: diverse retrotransposons and their contribution to barley genome dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

12 September 2017

LTR retrotransposons and flowering plant genome size: emergence of the increase/decrease model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

12 September 2017

DNA rearrangement in orthologous orp regions of the maize, rice and sorghum genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

12 September 2017

Mechanisms of recent genome size variation in flowering plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

12 September 2017

Evidence and consequence of porcine endogenous retrovirus recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

12 September 2017

Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

12 September 2017

Characterization of transposable elements in the genome of rice (Oryza sativa L.) using Representational Difference Analysis (RDA).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

12 September 2017

Mutational equilibrium model of genome size evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

12 September 2017

Dasheng: a recently amplified nonautonomous long terminal repeat element that is a major component of pericentromeric regions in rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

12 September 2017

A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

12 September 2017

Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

12 September 2017

Plant retrotransposons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

12 September 2017

Colinearity and its exceptions in orthologous adh regions of maize and sorghum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

12 September 2017

Alien introgression in rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

12 September 2017

Nested retrotransposons in the intergenic regions of the maize genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

12 September 2017

Cloning the differences between two complex genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

12 September 2017

The paleontology of intergene retrotransposons of maize.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

30 May 2018

Repetitive sequences: cause for variation in genome size and chromosome morphology in the genus Oryza.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

30 May 2018

High intrinsic rate of DNA loss in Drosophila.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

30 May 2018

A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

30 May 2018

Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and Aegilops).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

29 November 2018

Genomic paleontology provides evidence for two distinct origins of Asian rice (Oryza sativa L.).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

29 November 2018

Rapid genome divergence at orthologous low molecular weight glutenin loci of the A and Am genomes of wheat.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

29 November 2018

Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum L.) reveals multiple mechanisms of genome evolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1581435

29 November 2018

Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat

1 reference

https://pubmed.ncbi.nlm.nih.gov/16963705

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Formation of Solo-LTRs Through Unequal Homologous Recombination Counterbalances Amplifications of LTR Retrotransposons in Rice Oryza sativa L

1 reference

https://pubmed.ncbi.nlm.nih.gov/16963705

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Retrotransposon BARE-1 and Its Role in Genome Evolution in the Genus Hordeum

1 reference

https://pubmed.ncbi.nlm.nih.gov/16963705

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1101/GR.5290206

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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