(Q35807353)

10 August 2017

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species (English)

1 reference

10 August 2017

0 references

0 references

6

Tanja Woyke

0 references

Stephen M Gross

Stephen Gross

4

0 references

Damaris Desgarennes

Damaris Desgarennes

2

0 references

Laila P Partida-Martinez

Laila P Partida-Martinez

9

0 references

Scott R Clingenpeel

Scott Clingenpeel

5

0 references

Axel Visel

Axel Visel

8

0 references

Susannah G. Tringe

Susannah G Tringe

10

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author name string

Devin Coleman-Derr

1

1 reference

10 August 2017

Citlali Fonseca-Garcia

3

1 reference

10 August 2017

Gretchen North

7

1 reference

10 August 2017

language of work or name

English

0 references

publication date

15 October 2015

1 reference

10 August 2017

1 reference

10 August 2017

209

1 reference

10 August 2017

2

1 reference

10 August 2017

798-811

1 reference

Associations with rhizosphere bacteria can confer an adaptive advantage to plants

10 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Primer and platform effects on 16S rRNA tag sequencing

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

PLANT MICROBIOME. Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

The soil microbiome influences grapevine-associated microbiota

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Structure and function of the bacterial root microbiota in wild and domesticated barley.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Seasonal community succession of the phyllosphere microbiome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

The importance of the microbiome of the plant holobiont

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Structure, variation, and assembly of the root-associated microbiomes of rice

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Genome-wide association study of Arabidopsis thaliana leaf microbial community.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Selection on soil microbiomes reveals reproducible impacts on plant function

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Diazotrophic potential among bacterial communities associated with wild and cultivated Agave species

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Photosynthetic acclimation to drought stress in Agave salmiana Otto ex Salm-Dyck seedlings is largely dependent on thermal dissipation and enhanced electron flux to photosystem I.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Light to liquid fuel: theoretical and realized energy conversion efficiency of plants using crassulacean acid metabolism (CAM) in arid conditions

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Agave proves to be a low recalcitrant lignocellulosic feedstock for biofuels production on semi-arid lands

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Improved plant resistance to drought is promoted by the root-associated microbiome as a water stress-dependent trait

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Taxonomical and functional microbial community selection in soybean rhizosphere

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Rhizosphere microbiome assemblage is affected by plant development

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Reconstructing the microbial diversity and function of pre-agricultural tallgrass prairie soils in the United States

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Meta-analysis of deep-sequenced fungal communities indicates limited taxon sharing between studies and the presence of biogeographic patterns

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Going back to the roots: the microbial ecology of the rhizosphere

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

UPARSE: highly accurate OTU sequences from microbial amplicon reads

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Inside the root microbiome: bacterial root endophytes and plant growth promotion

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Diversity and heritability of the maize rhizosphere microbiome under field conditions

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Impact of shortened crop rotation of oilseed rape on soil and rhizosphere microbial diversity in relation to yield decline.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Fungal community analysis by high-throughput sequencing of amplified markers--a user's guide

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Microbial community biogeographic patterns in the rhizosphere of two Brazilian semi-arid leguminous trees

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

A drought resistance-promoting microbiome is selected by root system under desert farming

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Defining the core Arabidopsis thaliana root microbiome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

The microbe-free plant: fact or artifact?

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

The phylogenetic diversity of metagenomes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Diversity and distribution of soil fungal communities in a semiarid grassland.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Plant-growth-promoting rhizobacteria

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Exploiting the potential of plants with crassulacean acid metabolism for bioenergy production on marginal lands.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Selective progressive response of soil microbial community to wild oat roots

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Eukaryotic microbes, species recognition and the geographic limits of species: examples from the kingdom Fungi

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Fungal community analysis by large-scale sequencing of environmental samples

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Fungal-specific PCR primers developed for analysis of the ITS region of environmental DNA extracts

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Microbial inoculants and organic amendment improves plant establishment and soil rehabilitation under semiarid conditions

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Practical innovations for high-throughput amplicon sequencing.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Analysis of gene sequences indicates that quantity not quality of chloroplast small HSPs improves thermotolerance in C4 and CAM plants

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Feedstocks for lignocellulosic biofuels

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

A strong species-area relationship for eukaryotic soil microbes: island size matters for ectomycorrhizal fungi.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

Alcohol and science: saving the agave

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5057366

The global potential for Agave as a biofuel feedstock

25 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1111%2FNPH.13697

Highlights for Agave Productivity

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1111%2FNPH.13697

Identification and Characterisation of Bacteria Causing Soft-rot in Agave tequilana

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1111%2FNPH.13697

21 January 2018

Identifiers

DOI

10.1111/NPH.13697

1 reference

10 August 2017

1 reference

10 August 2017

PubMed publication ID

26467257

1 reference