(Q35837351)

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Revision of the nonequilibrium thermal dissociation and stringent washing approaches for identification of mixed nucleic acid targets by microarrays.

scientific article published on 11 April 2007

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scholarly article

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17430966%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

Revision of the nonequilibrium thermal dissociation and stringent washing approaches for identification of mixed nucleic acid targets by microarrays (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17430966%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

Alexander E. Pozhitkov

1

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29 December 2019

Syed A. Hashsham

3

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29 December 2019

4

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29 December 2019

author name string

Robert D Stedtfeld

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29 December 2019

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11 April 2007

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29 December 2019

Nucleic Acids Research

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29 December 2019

35

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29 December 2019

9

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29 December 2019

e70

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29 December 2019

describes a project that uses

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Improvement in the reproducibility and accuracy of DNA microarray quantification by optimizing hybridization conditions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Tests of rRNA hybridization to microarrays suggest that hybridization characteristics of oligonucleotide probes for species discrimination cannot be predicted

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

On-chip non-equilibrium dissociation curves and dissociation rate constants as methods to assess specificity of oligonucleotide probes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Rapid quantitative profiling of complex microbial populations

1 reference

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11 July 2018

Evaluation of gel-pad oligonucleotide microarray technology by using artificial neural networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Emission characteristics of fluorescent labels with respect to temperature changes and subsequent effects on DNA microchip studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Competitive hybridization kinetics reveals unexpected behavior patterns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

DNA microarray detection of nitrifying bacterial 16S rRNA in wastewater treatment plant samples

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

DNA microarrays on nanoscale-controlled surface

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Rapid quantification and taxonomic classification of environmental DNA from both prokaryotic and eukaryotic origins using a microarray.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Oligonucleotide hybridization studied by a surface plasmon diffraction sensor (SPDS).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Analysis of thermal melting curves.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Optimization of single-base-pair mismatch discrimination in oligonucleotide microarrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Direct profiling of environmental microbial populations by thermal dissociation analysis of native rRNAs hybridized to oligonucleotide microarrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Parallel characterization of anaerobic toluene- and ethylbenzene-degrading microbial consortia by PCR-denaturing gradient gel electrophoresis, RNA-DNA membrane hybridization, and DNA microarray technology.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Single-base-pair discrimination of terminal mismatches by using oligonucleotide microarrays and neural network analyses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Quantification of syntrophic fatty acid-beta-oxidizing bacteria in a mesophilic biogas reactor by oligonucleotide probe hybridization.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Quantification of Gordona amarae strains in foaming activated sludge and anaerobic digester systems with oligonucleotide hybridization probes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Sequence analysis by hybridization with oligonucleotide microchip: identification of beta-thalassemia mutations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Characterization of universal small-subunit rRNA hybridization probes for quantitative molecular microbial ecology studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

The nonequilibrium character of DNA melting: effects of the heating rate on the fine structure of melting curves.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Dissociation kinetics of 19 base paired oligonucleotide-DNA duplexes containing different single mismatched base pairs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

11 July 2018

Development of a statistically robust quantification method for microorganisms in mixtures using oligonucleotide microarrays.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

24 September 2018

Impact of prehybridization PCR amplification on microarray detection of nitrifying bacteria in wastewater treatment plant samples

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

24 September 2018

Evaluating single-base-pair discriminating capability of planar oligonucleotide microchips using a non-equilibrium dissociation approach.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

24 September 2018

Sequence-specific identification of 18 pathogenic microorganisms using microarray technology.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

24 September 2018

Optimization of an oligonucleotide microchip for microbial identification studies: a non-equilibrium dissociation approach.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1888805

24 September 2018

Slow relaxational processes in the melting of linear biopolymers: a theory and its application to nucleic acids

1 reference

https://pubmed.ncbi.nlm.nih.gov/17430966

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Optical melting of 128 octamer DNA duplexes. Effects of base pair location and nearest neighbors on thermal stability

1 reference

https://pubmed.ncbi.nlm.nih.gov/17430966

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An oligonucleotide hybridization approach to DNA sequencing

1 reference

https://pubmed.ncbi.nlm.nih.gov/17430966

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Comparison of the Use of In Vitro Transcribed and Native rRNA for the Quantification of Microorganisms in the Environment

1 reference

https://pubmed.ncbi.nlm.nih.gov/17430966

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High variability in melting profiles from gel pad arrays

1 reference

https://pubmed.ncbi.nlm.nih.gov/17430966

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Discrimination of shifts in a soil microbial community associated with TNT-contamination using a functional ANOVA of 16S rRNA hybridized to oligonucleotide microarrays

1 reference

https://pubmed.ncbi.nlm.nih.gov/17430966

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comment on "Discrimination of shifts in a soil microbial community associated with TNT-contamination using a functional ANOVA of 16S rRNA hybridized to oligonucleotide microarrays"

1 reference

https://pubmed.ncbi.nlm.nih.gov/17430966

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKM154

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17430966%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17430966%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17430966%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

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