(Q35860609)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

title

An integer linear programming approach for finding deregulated subgraphs in regulatory networks (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

0 references

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

14

Eckart Meese

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

15

Hans-Peter Lenhof

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

1

Christina Backes

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

6

Andreas Gerasch

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

5

Daniel Stöckel

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

author name string

Alexander Rurainski

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Oliver Müller

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Jan Küntzer

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Daniela Maisel

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Nicole Ludwig

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Matthias Hein

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Andreas Keller

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Helmut Burtscher

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Michael Kaufmann

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

language of work or name

English

0 references

publication date

30 December 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

volume

40

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

page(s)

e43

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 3.0 Unported

19 January 2020

copyright license

start time

11 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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11 July 2018

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Identification of diagnostic subnetwork markers for cancer in human protein-protein interaction network

11 July 2018

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11 July 2018

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CpG island hypermethylation in human astrocytomas

11 July 2018

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Inferring the functions of longevity genes with modular subnetwork biomarkers of Caenorhabditis elegans aging

11 July 2018

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11 July 2018

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Detecting disease associated modules and prioritizing active genes based on high throughput data

11 July 2018

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Reversing HOXA9 oncogene activation by PI3K inhibition: epigenetic mechanism and prognostic significance in human glioblastoma

11 July 2018

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KEGG for representation and analysis of molecular networks involving diseases and drugs

11 July 2018

1 reference

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BRCA1 tumours correlate with a HIF-1alpha phenotype and have a poor prognosis through modulation of hydroxylase enzyme profile expression

11 July 2018

1 reference

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A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis

11 July 2018

1 reference

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Fyn and SRC are effectors of oncogenic epidermal growth factor receptor signaling in glioblastoma patients

11 July 2018

1 reference

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Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions

11 July 2018

1 reference

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Oxidative stress, obesity, and breast cancer risk: results from the Shanghai Women's Health Study

11 July 2018

1 reference

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Altered proliferation and differentiation properties of primary mammary epithelial cells from BRCA1 mutation carriers.

11 July 2018

1 reference

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Identifying functional modules in protein-protein interaction networks: an integrated exact approach

11 July 2018

1 reference

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Uncovering signal transduction networks from high-throughput data by integer linear programming

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

PHDs overactivation during chronic hypoxia "desensitizes" HIFalpha and protects cells from necrosis

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

BNDB - the Biochemical Network Database

11 July 2018

1 reference

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Computation of significance scores of unweighted Gene Set Enrichment Analyses

11 July 2018

1 reference

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Improving gene set analysis of microarray data by SAM-GS.

11 July 2018

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Network-based analysis of affected biological processes in type 2 diabetes models

11 July 2018

1 reference

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GeneTrail--advanced gene set enrichment analysis

11 July 2018

1 reference

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From genes to functional classes in the study of biological systems

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

Identification of IGF2 signaling through phosphoinositide-3-kinase regulatory subunit 3 as a growth-promoting axis in glioblastoma

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

Impact of mutant p53 functional properties on TP53 mutation patterns and tumor phenotype: lessons from recent developments in the IARC TP53 database

11 July 2018

1 reference

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Bcl2L12 inhibits post-mitochondrial apoptosis signaling in glioblastoma

11 July 2018

1 reference

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Gene expression omnibus: microarray data storage, submission, retrieval, and analysis

11 July 2018

1 reference

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Molecular subclasses of high-grade glioma predict prognosis, delineate a pattern of disease progression, and resemble stages in neurogenesis

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

TRANSPATH: an information resource for storing and visualizing signaling pathways and their pathological aberrations.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

From genomics to chemical genomics: new developments in KEGG

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

Roles of the Rac1 and Rac3 GTPases in human tumor cell invasion

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

Expression of Rac3 in human brain tumors

11 July 2018

1 reference

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Differential network expression during drug and stress response.

11 July 2018

1 reference

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Increased GADD gene expression in human colon epithelial cells exposed to deoxycholate

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

IntAct: an open source molecular interaction database

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

The Database of Interacting Proteins: 2004 update

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

Cytoscape: a software environment for integrated models of biomolecular interaction networks

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

Development of human protein reference database as an initial platform for approaching systems biology in humans

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

A mechanism of cyclin D1 action encoded in the patterns of gene expression in human cancer

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

Average risks of breast and ovarian cancer associated with BRCA1 or BRCA2 mutations detected in case Series unselected for family history: a combined analysis of 22 studies

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

Discovering regulatory and signalling circuits in molecular interaction networks

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

MINT: a Molecular INTeraction database

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

Peroxynitrite induces GADD34, 45, and 153 VIA p38 MAPK in human neuroblastoma SH-SY5Y cells

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

KEGG: kyoto encyclopedia of genes and genomes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

Algorithms for detecting significantly mutated pathways in cancer.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

Caspase-3 and Bcl-2 expression in glioblastoma: an immunohistochemical study.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

BioNet: an R-Package for the functional analysis of biological networks

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

Identification of coordinately dysregulated subnetworks in complex phenotypes.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

Gene expression network analysis and applications to immunology.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

Inferring pathways from gene lists using a literature-derived network of biological relationships

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

Expression and biological activity of X-linked inhibitor of apoptosis (XIAP) in human malignant glioma

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315310

24 September 2018

Identifiers

DOI

10.1093/NAR/GKR1227

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22210863%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

PubMed publication ID

22210863

1 reference