(Q35875518)

English

Inconsistency and features of single nucleotide variants detected in whole exome sequencing versus transcriptome sequencing: A case study in lung cancer

scientific article published on 23 April 2015

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

Inconsistency and features of single nucleotide variants detected in whole exome sequencing versus transcriptome sequencing: A case study in lung cancer (English)

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

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Mari Mino-Kenudson

10

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Mari Mino-Kenudson

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15

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William Pao

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Europe PubMed Central

PMC publication ID

10 August 2017

2

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Peilin Jia

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Europe PubMed Central

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10 August 2017

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Zhongming Zhao

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10 August 2017

Martin J. Aryee

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Martin J Aryee

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10 August 2017

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Junfeng Xia

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Europe PubMed Central

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10 August 2017

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Huy Vuong

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Europe PubMed Central

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10 August 2017

Jeffrey A Engelman

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Jeffrey A Engelman

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10 August 2017

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A John Iafrate

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Europe PubMed Central

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10 August 2017

Rebecca S Heist

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Rebecca S Heist

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Europe PubMed Central

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10 August 2017

author name string

Timothy D O'Brien

1

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Europe PubMed Central

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10 August 2017

Uma Saxena

4

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Europe PubMed Central

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10 August 2017

Hailing Jin

5

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Europe PubMed Central

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10 August 2017

Pora Kim

7

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Europe PubMed Central

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10 August 2017

Qingguo Wang

8

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Europe PubMed Central

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10 August 2017

Long P Le

12

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10 August 2017

publication date

23 April 2015

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Europe PubMed Central

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10 August 2017

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Europe PubMed Central

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10 August 2017

83

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Europe PubMed Central

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10 August 2017

118-127

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Europe PubMed Central

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10 August 2017

Comprehensive molecular profiling of lung adenocarcinoma

1 reference

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11 July 2018

Integrated RNA and DNA sequencing improves mutation detection in low purity tumors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

The promise of whole-exome sequencing in medical genetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

Detecting somatic point mutations in cancer genome sequencing data: a comparison of mutation callers

1 reference

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11 July 2018

Next-generation sequencing of paired tyrosine kinase inhibitor-sensitive and -resistant EGFR mutant lung cancer cell lines identifies spectrum of DNA changes associated with drug resistance

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11 July 2018

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

Cancer genome landscapes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

Recoding RNA editing of AZIN1 predisposes to hepatocellular carcinoma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

Genome and transcriptome sequencing of lung cancers reveal diverse mutational and splicing events.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

Genomic landscape of non-small cell lung cancer in smokers and never-smokers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

The transcriptional landscape and mutational profile of lung adenocarcinoma.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

An integrated encyclopedia of DNA elements in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

Exome versus transcriptome sequencing in identifying coding region variants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

Comment on "Widespread RNA and DNA sequence differences in the human transcriptome".

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

Posttranscriptional recoding by RNA editing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

What can exome sequencing do for you?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

Improved survival with vemurafenib in melanoma with BRAF V600E mutation

1 reference

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11 July 2018

A framework for variation discovery and genotyping using next-generation DNA sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

Screening the human exome: a comparison of whole genome and whole transcriptome sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

Fast and accurate long-read alignment with Burrows-Wheeler transform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

Detection of single nucleotide variations in expressed exons of the human genome using RNA-Seq

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

The Sequence Alignment/Map format and SAMtools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

Altered adenosine-to-inosine RNA editing in human cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

EGFR mutations in lung cancer: correlation with clinical response to gefitinib therapy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

Mutations of the BRAF gene in human cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

11 July 2018

Comment on "Widespread RNA and DNA sequence differences in the human transcriptome".

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

24 September 2018

Identification of recurring tumor-specific somatic mutations in acute myeloid leukemia by transcriptome sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509831

14 November 2018

Comment on "Widespread RNA and DNA sequence differences in the human transcriptome"

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2015.04.016

7 January 2021

Identifiers

10.1016/J.YMETH.2015.04.016

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

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